Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02078 and RBAM_012330

See Amino acid alignment / Visit BSNT_02078 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02078___yjkB.1.9828.seq
#    -bsequence dna-align/RBAM_012330___yjkB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02078___yjkB-RBAM_012330___yjkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02078___yjkB-RBAM_012330___yjkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02078___yjkB
# 2: RBAM_012330___yjkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     502/826 (60.8%)
# Similarity:   502/826 (60.8%)
# Gaps:         149/826 (18.0%)
# Score: 1399.5
# 
#
#=======================================

BSNT_02078___      1 ------------ATGGAAGCAAACGATCAAACACAAAACATACCAGCCAT     38
                                 |||.|||               ||.|.||.||.||.||
RBAM_012330__      1 GTGTCCTCCTGTATGAAAG---------------AAGAAATTCCGGCAAT     35

BSNT_02078___     39 CTC-CTTCAGATCAGTCAGAAAAAGCTATAAACAAGATGGACAA----AC     83
                     .|| .|||.| ||||.|.|.|||.|||.|.|||||    .||||    .|
RBAM_012330__     36 ATCTTTTCTG-TCAGCCGGCAAACGCTTTGAACAA----AACAATGCGTC     80

BSNT_02078___     84 CTATGATGTGCT--GCAGGATGTCACCGGAGACATTCAACAGGGCGCAAT    131
                     ||.||||||.||  ||.|  |||.||||||.|.||||||.|.||..|.||
RBAM_012330__     81 CTTTGATGTCCTAAGCCG--TGTAACCGGACATATTCAAAAAGGTTCTAT    128

BSNT_02078___    132 CGTA-GCCGTT-TTAGGTCCTTCCGGCTCAGGCAAAAGCACCCTCCTTTC    179
                     |  | |.|||| .||||.|||||||||.|.||.||||||||..|.||.||
RBAM_012330__    129 C--ACGGCGTTGATAGGGCCTTCCGGCGCGGGAAAAAGCACATTGCTGTC    176

BSNT_02078___    180 TATGTGTAATTTAATGAGAACGCCTGACAGCGGCGAAGTCAACATATACG    229
                     ..||||.|||.|.||||..||.|||||....||.|||||.....|||.||
RBAM_012330__    177 GCTGTGCAATCTGATGAATACACCTGATGAAGGGGAAGTGCTTGTATTCG    226

BSNT_02078___    230 GAAAGGAAGTCAGAGAATGGAATGTCAATGAGCTGAGGCGAACGGCAGCC    279
                     ||||.|||.|.|||.|.|||.|..|||..|||||.||...|||.||.|.|
RBAM_012330__    227 GAAAAGAAATAAGACACTGGGACATCAGAGAGCTCAGAAAAACCGCGGGC    276

BSNT_02078___    280 CTCGCGTTTCAATCGGCTCCCGTGCTCGACGGGACAGTGCGTGACAATTT    329
                     ||.||.||||||||.||||||||.|||||.||.||.|||||.|||||   
RBAM_012330__    277 CTTGCATTTCAATCAGCTCCCGTCCTCGAGGGAACGGTGCGGGACAA---    323

BSNT_02078___    330 AAGTCTTGTACAAAGGCT-GCATCAA---TCC--------CAGCTGTACT    367
                        .|||.|      ||| |||..||   |||        ||||..||..
RBAM_012330__    324 ---CCTTCT------GCTCGCAGAAAAACTCCACGGGGCACAGCACTATA    364

BSNT_02078___    368 CTCCTGAAAAGCTGGC---TTCGCTTGCAGGGCTGCCGCCAGAGTTGTTA    414
                     |.||||||.||||.||   ||   ||.|||..||.||||..|.|.|..|.
RBAM_012330__    365 CGCCTGAAGAGCTCGCAGATT---TTACAGACCTTCCGCGCGTGCTTCTG    411

BSNT_02078___    415 GACAGAAGCGCCAGAGACTTATCGGGCGGGCAGCGGCA-AAGACTGTCAC    463
                     ||..|||..||.|.|||.|||||.||.||.|||||||| ||| ||.|||.
RBAM_012330__    412 GATCGAAATGCAAAAGAATTATCCGGAGGCCAGCGGCAGAAG-CTCTCAT    460

BSNT_02078___    464 TGGCCAGAACGCTCTCAAATC---CTTCC-TCCATTCTATTGTTGGACGA    509
                     |.||..||||.|||.|    |   ||.|| |||||.||..||.||||.||
RBAM_012330__    461 TAGCGCGAACCCTCGC----CGGACTGCCGTCCATCCTGCTGCTGGATGA    506

BSNT_02078___    510 AATCACATCGGCCTTGGACCCGGT------TTCTGCTC-TTGAGATTGAA    552
                     ||||||.|||||..||||||| ||      ||||..|| ||||||     
RBAM_012330__    507 AATCACCTCGGCGCTGGACCC-GTCATCCGTTCTCATCATTGAGA-----    550

BSNT_02078___    553 GAACTGAT---CAAACGTCAGCATCAAGAGAAAAAATG--GACAGTCATG    597
                      |||||||   .|||| ||  ||||  |..|||||..|  |||.|||.||
RBAM_012330__    551 -AACTGATTACGAAAC-TC--CATC--GGCAAAAACAGCTGACGGTCCTG    594

BSNT_02078___    598 TGGGTCACTCATAATATGGAGCAGGCAAAACGAATAGCCGATACCATTTG    647
                     |||.||||.|||||..|.||.||.||..||||..||.|||||||..|.||
RBAM_012330__    595 TGGATCACCCATAACCTTGAACAAGCGGAACGGTTATCCGATACGGTATG    644

BSNT_02078___    648 GTTTATGGCAGATGGCCGGCTGCTTGAAATCGCTGAAACCGACACATTTT    697
                     |||||||||.||.||.|||||..|.||.|.|||.|||||..|.||.||.|
RBAM_012330__    645 GTTTATGGCTGAGGGTCGGCTTTTAGAGACCGCGGAAACGAAAACGTTCT    694

BSNT_02078___    698 TCTCCGCTCCGCAGCATGAAGCAGCGAAA---GAA-------------TT    731
                     |               |.|.|.|.|||||   |||             ||
RBAM_012330__    695 T---------------TAAGGAACCGAAACACGAAAAGGCCCGGGCGCTT    729

BSNT_02078___    732 TTTGAAGGGAGGCACTCGG----TAA    753
                     ||..|||||||     |||    |.|
RBAM_012330__    730 TTACAAGGGAG-----CGGGTGCTGA    750


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