Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02076 and RBAM_012320

See DNA alignment / Visit BSNT_02076 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence pep-align/BSNT_02076___yjkA.1.9828.seq
#    -bsequence pep-align/RBAM_012320___yjkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02076___yjkA-RBAM_012320___yjkA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02076___yjkA-RBAM_012320___yjkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02076___yjkA
# 2: RBAM_012320___yjkA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     204/253 (80.6%)
# Similarity:   226/253 (89.3%)
# Gaps:           3/253 ( 1.2%)
# Score: 1004.0
# 
#
#=======================================

BSNT_02076___      1 MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLS     50
                     |:.|||.||.|||:||||||||||||||||||:||:||.:||||||||||
RBAM_012320__      1 MNDLSLLLTSIFVIIALFLSKSFKAGVEKDMIVATVRAVIQLLIIGYVLS     50

BSNT_02076___     51 LIFRGDHPVFILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIV    100
                     ||||||||:||:|||||||..|:.||.||||..||||||||..|||.|.|
RBAM_012320__     51 LIFRGDHPIFIILMVLLMLTAASHNVAKRKKMRIGSFWRVFLTLAIAETV    100

BSNT_02076___    101 TQGILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEE    150
                     |||:||:|||||.|:||||.|||||||||||||||||:||:||..:||||
RBAM_012320__    101 TQGLLLTLHIIPFTSRYVISISGMVIGNSMVLSSLFLSRLSSEADLRKEE    150

BSNT_02076___    151 IQLILSLGGTPKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQI    200
                     |||||||||||||::::||||:||:|||||||||||||||||||||||||
RBAM_012320__    151 IQLILSLGGTPKQAVRQILTSSMKLSMIPTLESQKTLGLVQLPGMMTGQI    200

BSNT_02076___    201 LAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLFTVHQQLKQNE    250
                     ||||||||||||||||||||||||.|||:|||.||||||||.|.|||:..
RBAM_012320__    201 LAGADPIQAVRFQLLIVFTTMASALLTCIILSALTYPSLFTEHWQLKKFS    250

BSNT_02076___    250 ---    250
                        
RBAM_012320__    251 REA    253


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