Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02076 and RBAM_012320

See Amino acid alignment / Visit BSNT_02076 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02076___yjkA.1.9828.seq
#    -bsequence dna-align/RBAM_012320___yjkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02076___yjkA-RBAM_012320___yjkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02076___yjkA-RBAM_012320___yjkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02076___yjkA
# 2: RBAM_012320___yjkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     559/776 (72.0%)
# Similarity:   559/776 (72.0%)
# Gaps:          37/776 ( 4.8%)
# Score: 1975.5
# 
#
#=======================================

BSNT_02076___      1 ATGGATTACCTTTCTCTCTCTTTAACGATGATCTTTGTTTTGATCGCCTT     50
                     |||.||.|.||||||||.|..||.||.|..||.|||||..|.||.||.||
RBAM_012320__      1 ATGAATGATCTTTCTCTGTTATTGACAAGTATATTTGTCATTATTGCTTT     50

BSNT_02076___     51 GTTTTTATCAAAATCCTTTAAAGCCGGTGTAGAAAAAGACATGATCATCG    100
                     .||..|.||.|||||.|||||||||||.||.|||||.||.||||||.|||
RBAM_012320__     51 ATTCCTGTCTAAATCTTTTAAAGCCGGGGTCGAAAAGGATATGATCGTCG    100

BSNT_02076___    101 CCACCATCCGGGCCGCGGTGCAGCTGCTTATCATCGGTTATGTTTTGTCG    150
                     |.|||.||.||||||...|.|||||.||.||||||||.|||||..||||.
RBAM_012320__    101 CAACCGTCAGGGCCGTCATTCAGCTTCTCATCATCGGCTATGTGCTGTCA    150

BSNT_02076___    151 CTGATTTTTCGCGGAGACCACCCTGTTTTTATCCTGCTGATGGTGCTGTT    200
                     .|||||||||||||.||.|||||..|.||||||.|..|.||||||||..|
RBAM_012320__    151 TTGATTTTTCGCGGTGATCACCCGATATTTATCATATTAATGGTGCTTCT    200

BSNT_02076___    201 AATGCTCGCGGTGGCGGCGCAAAATGTCATCAAGCGAAAGAAAAATAC-T    249
                     .||||||.|||..||..||||.||||||..|||.||.|| ||||||.| .
RBAM_012320__    201 CATGCTCACGGCCGCTTCGCACAATGTCGCCAAACGGAA-AAAAATGCGG    249

BSNT_02076___    250 ATCGGTTCGTTTTGGAGGGTGTT--TGCCGCGTTAGCAATCGTAGAAATT    297
                     |||||.||.||||||.|.||.||  ||.|.|  |.||.||||..||||..
RBAM_012320__    250 ATCGGCTCATTTTGGCGCGTTTTTCTGACAC--TGGCGATCGCGGAAACC    297

BSNT_02076___    298 GTGACGCAGGGAATTCTGCTGTCTCTTCATATCATTCCGCTTACGGCACG    347
                     ||||||||||||.||.|.|||.|.|||||.|||||||||.|.||..||.|
RBAM_012320__    298 GTGACGCAGGGACTTTTACTGACCCTTCACATCATTCCGTTCACTTCAAG    347

BSNT_02076___    348 ATATGTCATTCCGATCAGCGGGATGGTCATCGGAAATTCGATGGTGCTCT    397
                     ||||||||||.||||.|||||.||||||||||||||.||.||||||||||
RBAM_012320__    348 ATATGTCATTTCGATAAGCGGCATGGTCATCGGAAACTCCATGGTGCTCT    397

BSNT_02076___    398 CAAGTTTGTTTCTAAACCGGCTTAACTCAGAAGTCGGCGTTCGCAAAGAA    447
                     ||||..|||||.|||.|.||||.|..||.||||..|.|.|.||.||||||
RBAM_012320__    398 CAAGCCTGTTTTTAAGCAGGCTCAGTTCGGAAGCAGACCTGCGGAAAGAA    447

BSNT_02076___    448 GAAATTCAATTAATATTGTCACTTGGCGGCACACCGAAGCAATCCATACA    497
                     |||||.||..|.||..|.||.||.||.||.||.||.|||||..||.|.|.
RBAM_012320__    448 GAAATCCAGCTGATTCTCTCTCTCGGAGGAACGCCTAAGCAGGCCGTCCG    497

BSNT_02076___    498 GCGCATTCTTACCT-CAGCGATGAAAATGAGTATGATCCCGACGCTCGAA    546
                     ||..||..|.||.| ||| .|||||..|.|||||||||||||||||.|||
RBAM_012320__    498 GCAGATATTGACGTCCAG-TATGAAGCTCAGTATGATCCCGACGCTTGAA    546

BSNT_02076___    547 AGCCAGAAAACACTGGGTCTTGTCCAGCTTCCCGGCATGATGACTGGCCA    596
                     ||||||||||||.|||||||.||.||||||||||||||||||||.||.||
RBAM_012320__    547 AGCCAGAAAACATTGGGTCTCGTTCAGCTTCCCGGCATGATGACGGGGCA    596

BSNT_02076___    597 GATTCTAGCCGGCGCGGACCCGATTCAGGCAGTACGCTTTCAACTCTTAA    646
                     ||||.||||.||.||.||.|||||.|||||.||.||||||||.||..|.|
RBAM_012320__    597 GATTTTAGCGGGGGCTGATCCGATACAGGCGGTGCGCTTTCAGCTGCTGA    646

BSNT_02076___    647 TCGTGTTTACAACGATGGCCTCAGCCGCGCTGACTTGTGTAATCTTAAGC    696
                     ||||.|||||||||||||||||.||....||.||.|||.|.||..|.|||
RBAM_012320__    647 TCGTTTTTACAACGATGGCCTCCGCTCTTCTTACATGTATCATACTCAGC    696

BSNT_02076___    697 GTGCTGACATACCCATCATTATTCACCGTTCA-----------------T    729
                     |...|||||||.||.||..|.|||||.|..||                 |
RBAM_012320__    697 GCCTTGACATATCCTTCCCTTTTCACGGAACACTGGCAATTAAAAAAATT    746

BSNT_02076___    730 CAGCAGCTGAAGC--AGAATGAATGA    753
                     |||||| .|||||  ||         
RBAM_012320__    747 CAGCAG-GGAAGCGTAG---------    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02076 and RBAM_012320

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
