Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02060 and RBAM_012250

See DNA alignment / Visit BSNT_02060 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence pep-align/BSNT_02060.1.9828.seq
#    -bsequence pep-align/RBAM_012250___yjgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02060-RBAM_012250___yjgA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02060-RBAM_012250___yjgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02060
# 2: RBAM_012250___yjgA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 169
# Identity:      71/169 (42.0%)
# Similarity:    92/169 (54.4%)
# Gaps:          42/169 (24.9%)
# Score: 349.0
# 
#
#=======================================

BSNT_02060         1 MRLFSRFFSGQIKDIFLTIQGDEKETGYQFAMIRNRW--IYAVFTVLIIG     48
                                                      .||:  .|.:.||.||.
RBAM_012250__      1 ---------------------------------MNRYPLTYGICTVFIIA     17

BSNT_02060        49 LGLGSRA--FSSVLPDTLNTYLGDSLWAAMIFTGCGFLFRKLKTMITGII     96
                     |||.||.  .:::||..:|.||||:|||||||||.|.|||.::|.....:
RBAM_012250__     18 LGLLSRTAYITALLPGIINAYLGDALWAAMIFTGFGLLFRNIRTETAAFL     67

BSNT_02060        97 SLSFCFVIEFSQLYHAEWIDQIRDTSLGGLVLGYGFLWSDIEAYTIGIAA    146
                     |||||.:||.||||||.|||.||.::||||:||:.|:||||.|||:|:.|
RBAM_012250__     68 SLSFCCLIECSQLYHAPWIDAIRSSTLGGLILGWQFVWSDIFAYTLGVCA    117

BSNT_02060       147 CAAIELLVLGIKKRRCM--    163
                     .|.:|   ..:|:.|..  
RBAM_012250__    118 AAFLE---WAVKRNRQSPS    133


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