Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02060 and RBAM_012250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02060.1.9828.seq
# -bsequence dna-align/RBAM_012250___yjgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02060-RBAM_012250___yjgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02060-RBAM_012250___yjgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02060
# 2: RBAM_012250___yjgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 257/540 (47.6%)
# Similarity: 257/540 (47.6%)
# Gaps: 186/540 (34.4%)
# Score: 638.5
#
#
#=======================================
BSNT_02060 1 ATGCGGCTATTCAGCCGCTTTTTTAGTGGACAAATAAAAGATATATTCCT 50
RBAM_012250__ 0 -------------------------------------------------- 0
BSNT_02060 51 TACAATACAGGGAGATGAAAAAGAGACGGGGTATCAATTCGCAATGATTC 100
.|||.|.
RBAM_012250__ 1 -------------------------------------------GTGAATA 7
BSNT_02060 101 GAAATCGTTGGATATATGCAGTTTTCACCGTACTGATCATTGGGCTGGG- 149
||.|||..|.||.|||.|.|.|.|..|||||..|.|||||.|..||.||
RBAM_012250__ 8 GATATCCATTGACATACGGAATATGTACCGTTTTTATCATCGCCCTCGGT 57
BSNT_02060 150 --GCTTGGATCCAGA---GCAT---TCTCC-----AGTGTTCTTCCTGAT 186
||| .|||||| |||| ||.|| |.|| ||.|..
RBAM_012250__ 58 TTGCT---GTCCAGAACCGCATACATCACCGCCCTATTG-----CCCGGC 99
BSNT_02060 187 ACCCTCAATACTTATCTGGGAGACTCGTTGTGGGCCGCTATGATCTTTAC 236
|.|.|.||..|||||.|.|||||..|.||||||||.||.|||||.|||||
RBAM_012250__ 100 ATCATAAACGCTTATTTAGGAGATGCCTTGTGGGCGGCAATGATTTTTAC 149
BSNT_02060 237 GGGATGCGGATTTCTATTTCGGAAGCTGAAGACAATGATAACGG--GCA- 283
.||||.|||..||||.||||||||..|...||| |..|||.| |||
RBAM_012250__ 150 AGGATTCGGGCTTCTGTTTCGGAACATCCGGAC---GGAAACAGCCGCAT 196
BSNT_02060 284 TTATCAGTCTTTCTTTCTGTTTTGTCATTGAATTCAGCCAGCTCTATCAT 333
||.|.||.||.||.||.||.|.|.|.|||||||.|||||||||.|||||.
RBAM_012250__ 197 TTTTGAGCCTCTCGTTTTGCTGTCTGATTGAATGCAGCCAGCTGTATCAC 246
BSNT_02060 334 GCCGAATGGATCGAC-----CAGATTAG--GGATACTTCTCTTGGCGGGC 376
||....|||||.||| |||| || |.| |.||.|||||||
RBAM_012250__ 247 GCGCCTTGGATTGACGCAATCAGA--AGCAGCA-----CGCTCGGCGGGC 289
BSNT_02060 377 TTGTACTGGGGTACGG--TTTTTTATGGAGCGATATCGAAGCATATACAA 424
|..|.||.||.| || .|||.|.|||||.||.||....||.|||||..
RBAM_012250__ 290 TGATCCTCGGCT--GGCAATTTGTCTGGAGTGACATTTTCGCCTATACCC 337
BSNT_02060 425 TCGGAAT-TGCCGCCTGTGCCGCCA----TAGAACTGCTGGTTTTGGG-- 467
||||..| || ||| ||||| || ||||| ||||
RBAM_012250__ 338 TCGGGGTATG-CGC---TGCCG-CATTTTTAGAA----------TGGGCC 372
BSNT_02060 468 --AATCAAAAAGCGCCGCTGTATGTGA------------- 492
||..|.|||.|||| |
RBAM_012250__ 373 GTAAAAAGAAACCGCC----------AGTCCCCTTCATAA 402
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