Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02060 and RBAM_012250

See Amino acid alignment / Visit BSNT_02060 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence dna-align/BSNT_02060.1.9828.seq
#    -bsequence dna-align/RBAM_012250___yjgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02060-RBAM_012250___yjgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02060-RBAM_012250___yjgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02060
# 2: RBAM_012250___yjgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     257/540 (47.6%)
# Similarity:   257/540 (47.6%)
# Gaps:         186/540 (34.4%)
# Score: 638.5
# 
#
#=======================================

BSNT_02060         1 ATGCGGCTATTCAGCCGCTTTTTTAGTGGACAAATAAAAGATATATTCCT     50
                                                                       
RBAM_012250__      0 --------------------------------------------------      0

BSNT_02060        51 TACAATACAGGGAGATGAAAAAGAGACGGGGTATCAATTCGCAATGATTC    100
                                                                .|||.|.
RBAM_012250__      1 -------------------------------------------GTGAATA      7

BSNT_02060       101 GAAATCGTTGGATATATGCAGTTTTCACCGTACTGATCATTGGGCTGGG-    149
                     ||.|||..|.||.|||.|.|.|.|..|||||..|.|||||.|..||.|| 
RBAM_012250__      8 GATATCCATTGACATACGGAATATGTACCGTTTTTATCATCGCCCTCGGT     57

BSNT_02060       150 --GCTTGGATCCAGA---GCAT---TCTCC-----AGTGTTCTTCCTGAT    186
                       |||   .||||||   ||||   ||.||     |.||     ||.|..
RBAM_012250__     58 TTGCT---GTCCAGAACCGCATACATCACCGCCCTATTG-----CCCGGC     99

BSNT_02060       187 ACCCTCAATACTTATCTGGGAGACTCGTTGTGGGCCGCTATGATCTTTAC    236
                     |.|.|.||..|||||.|.|||||..|.||||||||.||.|||||.|||||
RBAM_012250__    100 ATCATAAACGCTTATTTAGGAGATGCCTTGTGGGCGGCAATGATTTTTAC    149

BSNT_02060       237 GGGATGCGGATTTCTATTTCGGAAGCTGAAGACAATGATAACGG--GCA-    283
                     .||||.|||..||||.||||||||..|...|||   |..|||.|  ||| 
RBAM_012250__    150 AGGATTCGGGCTTCTGTTTCGGAACATCCGGAC---GGAAACAGCCGCAT    196

BSNT_02060       284 TTATCAGTCTTTCTTTCTGTTTTGTCATTGAATTCAGCCAGCTCTATCAT    333
                     ||.|.||.||.||.||.||.|.|.|.|||||||.|||||||||.|||||.
RBAM_012250__    197 TTTTGAGCCTCTCGTTTTGCTGTCTGATTGAATGCAGCCAGCTGTATCAC    246

BSNT_02060       334 GCCGAATGGATCGAC-----CAGATTAG--GGATACTTCTCTTGGCGGGC    376
                     ||....|||||.|||     ||||  ||  |.|     |.||.|||||||
RBAM_012250__    247 GCGCCTTGGATTGACGCAATCAGA--AGCAGCA-----CGCTCGGCGGGC    289

BSNT_02060       377 TTGTACTGGGGTACGG--TTTTTTATGGAGCGATATCGAAGCATATACAA    424
                     |..|.||.||.|  ||  .|||.|.|||||.||.||....||.|||||..
RBAM_012250__    290 TGATCCTCGGCT--GGCAATTTGTCTGGAGTGACATTTTCGCCTATACCC    337

BSNT_02060       425 TCGGAAT-TGCCGCCTGTGCCGCCA----TAGAACTGCTGGTTTTGGG--    467
                     ||||..| || |||   ||||| ||    |||||          ||||  
RBAM_012250__    338 TCGGGGTATG-CGC---TGCCG-CATTTTTAGAA----------TGGGCC    372

BSNT_02060       468 --AATCAAAAAGCGCCGCTGTATGTGA-------------    492
                       ||..|.|||.||||          |             
RBAM_012250__    373 GTAAAAAGAAACCGCC----------AGTCCCCTTCATAA    402


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