Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02056 and RBAM_012240

See DNA alignment / Visit BSNT_02056 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence pep-align/BSNT_02056___yjfB.1.9828.seq
#    -bsequence pep-align/RBAM_012240___yjfB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02056___yjfB-RBAM_012240___yjfB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02056___yjfB-RBAM_012240___yjfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02056___yjfB
# 2: RBAM_012240___yjfB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 57
# Identity:      39/57 (68.4%)
# Similarity:    47/57 (82.5%)
# Gaps:           2/57 ( 3.5%)
# Score: 189.5
# 
#
#=======================================

BSNT_02056___      1 MDIPALSVAMHQASLAQNVNIALTKKMLDTAQQNADQTLKMI--QHPTLG     48
                     |||||||:|||||||||||||||||.::..||..|::|:||:  ||||.|
RBAM_012240__      1 MDIPALSIAMHQASLAQNVNIALTKTVMQHAQAAAEETVKMLPSQHPTAG     50

BSNT_02056___     49 QTIDVKA     55
                     .:||||.
RBAM_012240__     51 HSIDVKV     57


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.