Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05160 and RBAM_012120

See DNA alignment / Visit BSNT_05160 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence pep-align/BSNT_05160___yvfO.1.9828.seq
#    -bsequence pep-align/RBAM_012120___ganA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05160___yvfO-RBAM_012120___ganA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05160___yvfO-RBAM_012120___ganA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05160___yvfO
# 2: RBAM_012120___ganA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity:     121/458 (26.4%)
# Similarity:   182/458 (39.7%)
# Gaps:         117/458 (25.5%)
# Score: 391.5
# 
#
#=======================================

BSNT_05160___      1 -MKSKVKLFFAAAIVWSACSSTGYAAAIEKEKHVSKLRAEDLFVKKVEGM     49
                      .|:::|..|..||    |.|..:.|....||. .|.:||          
RBAM_012120__      1 MFKNRLKRVFVNAI----CLSLIFTAFTFFEKS-PKAKAE----------     35

BSNT_05160___     50 NKDFIKGADVSSVIALENSGVTFYNTSGKRQDIFTTLKQAGVNYVRVRIW     99
                      ..|..|||:..:..:|:.||.:.:..||::|....||..|:|.||:|::
RBAM_012120__     36 -APFAYGADIGWLKQMEDEGVRWLDDGGKQKDALQILKDHGINAVRLRVF     84

BSNT_05160___    100 NHPYDS-----NGN-----GYGGGNNDVQKAIEIGKRATANGMKVLADFH    139
                     .:|..|     :|.     ||    :|....:...|||.|.||||:.|||
RBAM_012120__     85 VNPPSSYYWLKDGTTWTMLGY----SDKAGVLAAAKRAKALGMKVMVDFH    130

BSNT_05160___    140 YSDFWADPAKQKVPKAWANLSFEAKKAKLYEYTKQSLQKMIKEGFDIGMV    189
                     |||.:|||..|..|..|...|....:|.:|.:|...::::...|.....|
RBAM_012120__    131 YSDVFADPGHQIKPNQWNGYSNSQLQAAVYNHTYDVMKELKNHGISPDWV    180

BSNT_05160___    190 QVGNETTGGFA---GET-DWTKMCQLFNEGSRAVRETNSNILVALHFTNP    235
                     |||||...|..   |.| |::|:..|.|:|..||:..:....|..|..:.
RBAM_012120__    181 QVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHG    230

BSNT_05160___    236 ETAGRYSFIAETLSKNKVDYDVFASSYYPFWHG-----TLQNLTSVLKAV    280
                     .....:.:..:...||....|:...|:||:|.|     ...:|:|.|..:
RBAM_012120__    231 TDNSLFRWWFDQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDI    280

BSNT_05160___    281 ANTYGKKVMVAETSYTYTAEDGDGHGNTAPKSGQTLPYPISVQGQATAVR    330
                     |:.|.|:|||.|..         |..|....|..|:...|.         
RBAM_012120__    281 ASRYNKEVMVVELG---------GDENNPKDSYWTIKDTIK---------    312

BSNT_05160___    331 DVMEAVANTGKAGLGVFYWEP---------AWIPVGPKTQIEKNKVLWET    371
                      :::||.| || |.|||||||         |: |:|...::.||.:.:.|
RBAM_012120__    313 -LVKAVPN-GK-GTGVFYWEPEAHSSVLSDAY-PLGATAKVSKNVLKYTT    358

BSNT_05160___    372 YGSGWASSYAAEYDPEDAGKWYGGSAVDNQALFDFNGHPLPSLQVFQYAE    421
                     ....:..:...:                                      
RBAM_012120__    359 AIDAFHDAATGK--------------------------------------    370

BSNT_05160___    422 SGHIPKKR    429
                             
RBAM_012120__    370 --------    370


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.