Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05160 and RBAM_012120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05160___yvfO.1.9828.seq
# -bsequence dna-align/RBAM_012120___ganA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05160___yvfO-RBAM_012120___ganA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05160___yvfO-RBAM_012120___ganA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05160___yvfO
# 2: RBAM_012120___ganA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity: 652/1568 (41.6%)
# Similarity: 652/1568 (41.6%)
# Gaps: 733/1568 (46.7%)
# Score: 1154.5
#
#
#=======================================
BSNT_05160___ 1 ATG----AAAA------GCAAAGTGAAATTGT------------TCTTTG 28
||| |||| |.||.|||.|.|||| |||||
RBAM_012120__ 1 ATGTTCAAAAACCGATTGAAACGTGTATTTGTAAACGCAATCTGTCTTT- 49
BSNT_05160___ 29 CGGCTGCCATCGTGTGGAGTGCATGTAGTTCAACAGGATATGCCGCTGC- 77
||..||| .|||| ||||
RBAM_012120__ 50 ---CTCTCAT-----------------TTTCA-------------CTGCT 66
BSNT_05160___ 78 --------CATTGAGAAG-----GAGAAGCACGTGTCAAAGCTTCGGGCA 114
|.|||||||| .| ||||| |||||
RBAM_012120__ 67 TTTACATTCTTTGAGAAGTCTCCTA-AAGCA------AAAGC-------- 101
BSNT_05160___ 115 GAGGA----TCTTTT-----------TGTTAAAAAAGTAGAGGGGATG-- 147
||| .|.||| ||.||.| |||||
RBAM_012120__ 102 --GGAAGCCCCGTTTGCCTATGGCGCTGATATA----------GGATGGC 139
BSNT_05160___ 148 ---AACAA--GGATTTTATCAAAGGGGCAGATGTGTCCAGCGTT------ 186
||||| ||| ||.|..|.|||| |||.|
RBAM_012120__ 140 TGAAACAAATGGA-----------GGACGAAGGTGT---GCGCTGGCTGG 175
BSNT_05160___ 187 ATTGCTTTGGAAAACAG--CGGTGTCACCTTTTACAATACAAGCGGA--- 231
||..|...||||||||| .|.|| |||| ||.||
RBAM_012120__ 176 ATGACGGCGGAAAACAGAAAGATG---CCTT-----------GCAGATTC 211
BSNT_05160___ 232 --AAACGTCA-GGACATCTTTACAACCTTAAAACAGGCTGGGGTCA-ACT 277
|||..||| ||| .|||| ||..||.| |||
RBAM_012120__ 212 TTAAAGATCACGGA-------------ATAAA------TGCCGTGAGACT 242
BSNT_05160___ 278 ----ATGTTCGCG--TCCGCATCTGGAATCACCCGTATGATT------CA 315
.||||.|.| ||||| .||.||.| |||.||| .|
RBAM_012120__ 243 GAGAGTGTTTGTGAATCCGC-----CAAGCAGC--TATTATTGGCTGAAA 285
BSNT_05160___ 316 AATGG--CAACGGGTATGGCGGGGGAAACAATG-------ATGTTCAAAA 356
.|.|| |||| |||| ||.||| ||..|.|.||
RBAM_012120__ 286 GACGGCACAAC----ATGG--------ACCATGCTCGGCTATAGTGACAA 323
BSNT_05160___ 357 AGCCATCGAAAT-----CGG-AAAAAGAGCGACAGCGAACGGAATGAAGG 400
|||...||.|.| ||| .|||||.||.|.||||...||||||||||
RBAM_012120__ 324 AGCGGGCGTACTTGCGGCGGCCAAAAGGGCAAAAGCGTTAGGAATGAAGG 373
BSNT_05160___ 401 TGCTGGCCGACTTTCACTACTCTGATTTCTGGGCCGATCCAGCGAAACAA 450
|..|||..|||||.||.|||..||||.|.|..||.|||||||
RBAM_012120__ 374 TAATGGTTGACTTCCATTACAGTGATGTGTTCGCTGATCCAG-------- 415
BSNT_05160___ 451 AAGGTGC--CCA----AAGCCTGGGCGAATCTCAGCTTTGAAGCAA---- 490
|| ||| ||||| |||.|||
RBAM_012120__ 416 -----GCCACCAGATCAAGCC------------------GAACCAATGGA 442
BSNT_05160___ 491 ----------AAAAAGCAA---------AGC--TCTATGAGTATACGAAA 519
|||.|||.| ||| |.|||.|..|||||
RBAM_012120__ 443 ACGGTTATTCAAACAGCCAGCTGCAGGCAGCCGTGTATAACCATACG--- 489
BSNT_05160___ 520 CAAAGCCTGCAAAAGATG--ATCAAGGAAGGCTTTGACAT--CGGCAT-- 563
.|.|||| ||.||.||| |||..|.|| ||||||
RBAM_012120__ 490 -----------TACGATGTCATGAAAGAA--CTTAAAAATCACGGCATCT 526
BSNT_05160___ 564 ----------GGTTCAGGTCGGAAATGAAACAA---CAGGAGGATT---- 596
|||.||.||.||.|||||||..| ||||| |||
RBAM_012120__ 527 CCCCTGATTGGGTGCAAGTAGGGAATGAAATGAATTCAGGA--ATTTTAC 574
BSNT_05160___ 597 TGCCGGTGAGACTG-ATTGGACGAA-GATGT--GCCAATT-----ATTTA 637
|||| .|||.| | |.||||| |||.| ||.|||| ..|||
RBAM_012120__ 575 TGCC----CGACGGCA--GCACGAACGATTTCAGCAAATTGACCGGCTTA 618
BSNT_05160___ 638 ATGA---------AGGAAGCCG----AGCGGTCAG---GGAGACAAATTC 671
.||| |.||.|||| |.|.||||| ||..||.||
RBAM_012120__ 619 CTGAACAAAGGCTATGACGCCGTGAAATCCGTCAGCCCGGCCACCAA--- 665
BSNT_05160___ 672 AAATATTTTGGTC----GCCCTGCATTTTACCAATCCTGAAACGGCTGGA 717
|||| || |||||..| |.||||| |
RBAM_012120__ 666 ---------GGTCATCAGC----CATTTGGC--------ACACGGC---A 691
BSNT_05160___ 718 AGG---------TATTCA--------TTT-----ATTGCAGAAACACTCA 745
.|| |||||| ||| |||....|||.|...|
RBAM_012120__ 692 CGGACAACAGCCTATTCAGATGGTGGTTTGATCAATTCTTTAAAAATGGA 741
BSNT_05160___ 746 GCAAAAACAAAGTGGATTATGAT--GTGTT---TGCTAGCTCCTATT--- 787
|.||||||..| .||.|| |.||| |.|||.| ||||||
RBAM_012120__ 742 GGAAAAACCGA------CATCATCGGCGTTTCATTCTATC-CCTATTGGG 784
BSNT_05160___ 788 ------ATCCTTTCTGGCATGGCACA--------TTACAA---AATTTGA 820
|.||.|.||||.| ||.|| |||..| |||||||
RBAM_012120__ 785 AAGGTAAGCCGTACTGGGA--GCTCACCGGCCATTTATCATCTAATTTGA 832
BSNT_05160___ 821 ---------CCTCTGTGCTGAAGGCTGTTGCCAATACG-TACGGCAAAAA 860
|||| ||| |||..|||..|
RBAM_012120__ 833 ATGACATCGCCTC----------------------ACGCTACAACAAGGA 860
BSNT_05160___ 861 AGTCATGGTGGCGGAGACATCGTACACCTATACCGCTGAGGATGGCGATG 910
|||||||||||..|| || ||
RBAM_012120__ 861 AGTCATGGTGGTTGA----------------AC---------------TG 879
BSNT_05160___ 911 GGC----ATGGAAA----------------TACAGCACCAAAAAGCGGGC 940
||| |||.||| |||.|.||||.|||
RBAM_012120__ 880 GGCGGAGATGAAAATAATCCGAAAGATTCCTACTGGACCATAAA------ 923
BSNT_05160___ 941 AGACGCTGCCATATCCAATTTCTGTTCAAGGCCAGGCAACTGCAGTAAGA 990
|||| .||||| .|||||
RBAM_012120__ 924 AGAC---ACCATA-----------------------AAACTG-------- 939
BSNT_05160___ 991 GATGTAATGGAGGCAGTGGCGAATACGGGCAAAGCAGGACTTGGTGTTTT 1040
.||.|.||.||..|||| .||||| ||||...||.||.||
RBAM_012120__ 940 ------GTGAAAGCCGTTCCGAA---CGGCAA---AGGAACCGGCGTATT 977
BSNT_05160___ 1041 CTACTGGGAGCCGGCGTGGATTCCAGTCGGGCCGAAG---ACACAGATAG 1087
.|||||||||| |||||| ||.|
RBAM_012120__ 978 TTACTGGGAGC--------------------CCGAAGCTCACTC------ 1001
BSNT_05160___ 1088 AGAAAAACAAAGTGTTATGGGAAACATACGGGT---CAGGGTGGGCGTCC 1134
.||.|||.|| .||.|||.|| || .|.||||
RBAM_012120__ 1002 ---------CAGCGTTCTG----TCAGACGCGTACCCA--TTAGGCG--- 1033
BSNT_05160___ 1135 AGCTATGCTGCTGAATACGACC----------CTGAAGACGCCGGGAAGT 1174
|.||| ||.||.|||.|..|||
RBAM_012120__ 1034 -----------------CAACCGCCAAAGTGTCTAAAAACGTCTTGAA-- 1064
BSNT_05160___ 1175 GGTATGGGGGAAGTGCTGTAGATAATCAA--GCTTTATTTGATTTTAATG 1222
|||..||| || |||.
RBAM_012120__ 1065 ---------------------ATACACAACCGC-------------AATC 1080
BSNT_05160___ 1223 GACACCCGCTGCCTTCTTTGCAGGTGTTTCAATATGCGGAGTCAGGACAT 1272
|| |||| |||||..||||.|...|||||
RBAM_012120__ 1081 GA----CGCT----------------TTTCATGATGCCGCAACAGGA--- 1107
BSNT_05160___ 1273 ATTCCAAAGAAACGCTGA 1290
||| |||
RBAM_012120__ 1108 ---------AAA---TGA 1113
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