Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01979 and RBAM_011920

See DNA alignment / Visit BSNT_01979 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence pep-align/BSNT_01979___yjcH.1.9828.seq
#    -bsequence pep-align/RBAM_011920___ycjH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01979___yjcH-RBAM_011920___ycjH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01979___yjcH-RBAM_011920___ycjH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01979___yjcH
# 2: RBAM_011920___ycjH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:     192/240 (80.0%)
# Similarity:   215/240 (89.6%)
# Gaps:           0/240 ( 0.0%)
# Score: 1060.0
# 
#
#=======================================

BSNT_01979___      1 MAPKNGTVQEKKFFSKELNEEMTLLVYLPSNYSPLYKYHVIIAQDGHDYF     50
                     ||.|||.:.|||.||.||.||||:|||||:.:|||||||.||||||||||
RBAM_011920__      1 MASKNGIIHEKKLFSHELEEEMTVLVYLPATFSPLYKYHTIIAQDGHDYF     50

BSNT_01979___     51 RLGRIGRQVEELLSKREIDRSIIIGVPYKDVKERRNTYHPEGSKFSAYKR    100
                     ||||||||.|||:||.||||.||||||||:|:|||||||||||||::|||
RBAM_011920__     51 RLGRIGRQAEELMSKGEIDRCIIIGVPYKNVRERRNTYHPEGSKFASYKR    100

BSNT_01979___    101 FIAHELVPFADDEYPTYQIGYGRTLIGDSLGATVSLMTALDYPNMFGNII    150
                     |||:|||||.|.||||||:|||||:||||||.|||||||:||||||||:|
RBAM_011920__    101 FIANELVPFIDKEYPTYQVGYGRTMIGDSLGGTVSLMTAIDYPNMFGNVI    150

BSNT_01979___    151 MQSPYVDKHVLEAVKQSDDIKHLSIYHQIGTKETDVHTTDGNILDFTEPN    200
                     |||||||.|||:||:||:|:|.:|:|||||.|||.||||||.:||||.||
RBAM_011920__    151 MQSPYVDGHVLDAVRQSEDLKQISVYHQIGEKETGVHTTDGQVLDFTAPN    200

BSNT_01979___    201 RELKQLLEKKLSDYDFEPFDGDHKWTYWQPLITPALKKML    240
                     .|||||||.|.|:|.:|.||||||||||||||||||||||
RBAM_011920__    201 EELKQLLESKQSEYTYETFDGDHKWTYWQPLITPALKKML    240


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