Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01975 and RBAM_011840

See DNA alignment / Visit BSNT_01975 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence pep-align/BSNT_01975___yjcD.1.9828.seq
#    -bsequence pep-align/RBAM_011840___yjcD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01975___yjcD-RBAM_011840___yjcD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01975___yjcD-RBAM_011840___yjcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01975___yjcD
# 2: RBAM_011840___yjcD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 761
# Identity:     599/761 (78.7%)
# Similarity:   665/761 (87.4%)
# Gaps:           2/761 ( 0.3%)
# Score: 3178.0
# 
#
#=======================================

BSNT_01975___      1 MKCARLNDRIIHLHTYSREHYQFLFEEGIKGHLFCSHCGKPVLLRLNIAD     50
                     |||||||:|.|||||||||||||||||..||::||:||.:|||:||:|.:
RBAM_011840__      1 MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILE     50

BSNT_01975___     51 PPEFIHRQPGDFPACEEAC-EPKPSKEEKKEDDQESGVIRLPKGKAIAAD     99
                     .|.|.|||.|||.|||:|| ..:|..|::||:.:|:|:.||||||||:.:
RBAM_011840__     51 QPAFYHRQKGDFTACEKACAAEEPQAEKEKEEYKEAGMFRLPKGKAISEN    100

BSNT_01975___    100 PSPAVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEG    149
                     |.|.|:||..|:.:....||.|.:...||||||.:|||.:|:||||||:|
RBAM_011840__    101 PKPIVSEWKSPKKVPAAEPFSPTSEAADTSLFPGIGLNREQMKAVTETDG    150

BSNT_01975___    150 PLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKER    199
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
RBAM_011840__    151 PLLVLAGAGSGKTRVLTARAAHMIEHLGISPENMLLVTFTTKAVAEMKER    200

BSNT_01975___    200 MANQYGLQPAKVRRLVTGTFHSLFYKILYHSNSAKWNGEHLLKMEWQREQ    249
                     |||:|||...||.|||||||||.|||||||.:|:||||..|||||||:||
RBAM_011840__    201 MANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQLLKMEWQKEQ    250

BSNT_01975___    250 YIKKALYEEGIDEKEFPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYR    299
                     |:|||||||.:||||||||||||.||.|||||:|:|.|||.|:|||:|||
RBAM_011840__    251 YVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR    300

BSNT_01975___    300 LYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEF    349
                     |||||||||:|..||||||||..|||||..|||:|.|||:||::||||||
RBAM_011840__    301 LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEF    350

BSNT_01975___    350 QDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP    399
                     ||||||||.||||:||||.||||||||||||||||||:||||||||||||
RBAM_011840__    351 QDINPVQYNIMQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYP    400

BSNT_01975___    400 GAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFY    449
                     .||||||||||||.|||||||..||||||.||.|||.|.:|.:..||:||
RBAM_011840__    401 AAKTIYLTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHNPVMFY    450

BSNT_01975___    450 PYDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSI    499
                     ||||||||||:|||:||||||||||:||||||||||.|||||||||||||
RBAM_011840__    451 PYDEEEEATMIVSDMKEKIQNGASPDDFAVLYRTNSAGRAIYERLHQSSI    500

BSNT_01975___    500 PYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKHLLPALFLKQSAL    549
                     ||.||||||:||||||||||||||||||||||.:|:|.||||||||||||
RBAM_011840__    501 PYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLLPALFLKQSAL    550

BSNT_01975___    550 NTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEA    599
                     .|||||||||||||||||.|||||||||:.|||:|||||||:||||||||
RBAM_011840__    551 QTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA    600

BSNT_01975___    600 ITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAH    649
                     |||||.|||||||||||||||||||||||||||:||.|||||||||||||
RBAM_011840__    601 ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAH    650

BSNT_01975___    650 VDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLE    699
                     ||||||||..:|||:||:|:||||||||||.|||:||..||||||||:||
RBAM_011840__    651 VDHMRAAENLKTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALE    700

BSNT_01975___    700 TARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPL    749
                     |||:||.|.|||||||||||||||.||||:||||.||||||..||||.||
RBAM_011840__    701 TARQGDPAPLEEERRLLYVAMTRAMQHLYVSCPAYRRGKTARSSRFLEPL    750

BSNT_01975___    750 LQKARQPLHH-    759
                     |:..|:.... 
RBAM_011840__    751 LRTDRRSALRI    761


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_01975 and RBAM_011840

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
