Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01975 and RBAM_011840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_01975___yjcD.1.9828.seq
# -bsequence dna-align/RBAM_011840___yjcD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01975___yjcD-RBAM_011840___yjcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01975___yjcD-RBAM_011840___yjcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01975___yjcD
# 2: RBAM_011840___yjcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2362
# Identity: 1719/2362 (72.8%)
# Similarity: 1719/2362 (72.8%)
# Gaps: 158/2362 ( 6.7%)
# Score: 6101.0
#
#
#=======================================
BSNT_01975___ 1 TTGAAATGCGCCCGACTGAATGATAGAATCATACATTTACATACATATTC 50
|||||||||||||||||||||.|..|||..||||||||||||||||||||
RBAM_011840__ 1 TTGAAATGCGCCCGACTGAATAACCGAACGATACATTTACATACATATTC 50
BSNT_01975___ 51 GAGAGAACATTATCAATTCCTCTTTGAAGAGG----GAATAAAAGGACAT 96
.|||||||||||.||||||||.||||||||.| | ||||||.||
RBAM_011840__ 51 TAGAGAACATTACCAATTCCTTTTTGAAGAAGCTCAG----AAAGGAAAT 96
BSNT_01975___ 97 TTATTTTGTTCTCATTGCGGAAAGCCCGTTTTGTTACGGCTTAACATCG- 145
.|.|||||..|.|||||.|...|||||||.|||.|.|||||| |||
RBAM_011840__ 97 ATTTTTTGCGCACATTGTGAGCAGCCCGTCTTGATGCGGCTT----TCGA 142
BSNT_01975___ 146 ---CCGATCCGCCAG-AGTTTATCCATCGCCAGCCAGGCGATTTTCCGGC 191
..||.|.|||.| |.||||| ||.||.||....||.||.||..|.||
RBAM_011840__ 143 TTTTAGAGCAGCCGGCATTTTAT-CACCGGCAAAAGGGAGACTTCACCGC 191
BSNT_01975___ 192 ATGTGAGGAGGCGTGC---------GAACC-GAAGCCCTCTAAAGAGGAA 231
.|||||..|.||.||| ||||| .|||| .|||.||
RBAM_011840__ 192 CTGTGAAAAAGCATGCGCGGCCGAGGAACCACAAGC-------GGAGAAA 234
BSNT_01975___ 232 AAAAAAGAAGACGATCAGGAATCTGG--TGTCATTCGTTTACCCAAGGGA 279
.||||||||||..||.|||||.|.|| ||| |.||..|.||.||.|||
RBAM_011840__ 235 GAAAAAGAAGAGTATAAGGAAGCCGGCATGT--TCCGCCTGCCGAAAGGA 282
BSNT_01975___ 280 AAAGCGAT-----------CG---CCGCTGACCCGTCCCCAGCTGTTACG 315
|||||||| || |||.| |||| .|.
RBAM_011840__ 283 AAAGCGATTTCAGAGAATCCGAAACCGAT----CGTC----------TCA 318
BSNT_01975___ 316 GAATGGCACCGTCCTAGAAGCATTAAA----CCAG-----GAACACCATT 356
||||||.|..|.|| ||| ||| ||.| || |||.||
RBAM_011840__ 319 GAATGGAAAAGCCC--GAA-----AAAAGTGCCTGCGGCCGA--ACCGTT 359
BSNT_01975___ 357 TGTGCCAAAAACAATAGAAC-------CCGATACGAGCCTTTTTCCGTCT 399
|...||||.|.| | |.||||| |.|.||.|||| |.
RBAM_011840__ 360 TTCACCAACATC-------CGAGGCGGCTGATAC-ATCTTTGTTCC--CC 399
BSNT_01975___ 400 G---TCGGTTTAAACACG-GATCAGCTGAAAGCTGTCACGGAAACAGAGG 445
| ||||..|.||| || ||.|||.||||.||.||.||.|||||.||.|
RBAM_011840__ 400 GGCATCGGCCTGAAC-CGTGAACAGATGAAGGCAGTTACTGAAACGGACG 448
BSNT_01975___ 446 GCCCGCTGCTCGTGCTTGCAGGTGCGGGGAGCGGAAAAACACGGGTGCTG 495
|.||..|..|.||||||||.||.|||||.||||||||||||.||||||||
RBAM_011840__ 449 GGCCTTTATTAGTGCTTGCCGGAGCGGGAAGCGGAAAAACAAGGGTGCTG 498
BSNT_01975___ 496 ACAGCCCGTGCCGCCCACATGATCGAACACTTAGGCATACCGCCTGAAAA 545
|||||.||.||||||||.|||||.||||||.|.|||||..|.|||||.||
RBAM_011840__ 499 ACAGCACGCGCCGCCCATATGATTGAACACCTCGGCATTTCACCTGAGAA 548
BSNT_01975___ 546 TATGCTGCTTGTCACCTTTACAACAAAAGCTGTCGCTGAAATGAAAGAGC 595
||||||||||||.||||||||.||||||||.|||||.|||||||||||||
RBAM_011840__ 549 TATGCTGCTTGTGACCTTTACGACAAAAGCCGTCGCCGAAATGAAAGAGC 598
BSNT_01975___ 596 GTATGGCCAACCAGTACGG-ATTACAGCCGGCAAAAGTCAGAAGACTTGT 644
|.|||||.||..||||||| .|..||||||| |||||||....|.||.||
RBAM_011840__ 599 GGATGGCAAATGAGTACGGTCTGGCAGCCGG-AAAAGTCTCCCGTCTCGT 647
BSNT_01975___ 645 GACAGGAACATTCCACAGTCTGTTTTATAAGATCTTGTATCACTCTAATT 694
|||.|||||||||||||||.|.||.|||||.||..|.|||||.|.|.|||
RBAM_011840__ 648 GACCGGAACATTCCACAGTTTTTTCTATAAAATACTCTATCATTATGATT 697
BSNT_01975___ 695 CTGCTAAATGGAACGGTGAG-CATCTGCTGAAAATGGAGTGGCAGCGGGA 743
||.|.||||||||||| .|| ||.||..|.||||||||||||||....||
RBAM_011840__ 698 CTTCAAAATGGAACGG-CAGCCAGCTTTTAAAAATGGAGTGGCAAAAAGA 746
BSNT_01975___ 744 ACAATATATCAAAAAAGCACTCTATGAAGAAGGCATCGATGAGAAAGAAT 793
.||||||.|.|||||.||.||||||||||||....|.|||||.|||||.|
RBAM_011840__ 747 GCAATATGTGAAAAAGGCGCTCTATGAAGAAAATTTGGATGAAAAAGAGT 796
BSNT_01975___ 794 TCCCAGTTGACCAAGCTCTGCAGCAGATCGGTTTTTGGAAAAACACTTAT 843
|.||.||.|||||.||.||.||||..|||||.|..|||||||||||.|||
RBAM_011840__ 797 TTCCCGTCGACCAGGCGCTTCAGCTTATCGGCTGCTGGAAAAACACGTAT 846
BSNT_01975___ 844 GTCCCAAATGA-ACGCATCCCTCTAAAAGATGAGTGGGAAAAACAAGTTT 892
.||||..|||| || |||.||.||....||.||.|||||.|||.||||.|
RBAM_011840__ 847 CTCCCCCATGAGAC-CATTCCGCTTGCGGACGACTGGGAGAAAAAAGTGT 895
BSNT_01975___ 893 ATCGTTTATATGAACATTATGAACGCCAGAA-----AAAAGAACACAGCC 937
|..|..|.||.||||||||.|||||.||||| |||| || |.|
RBAM_011840__ 896 ACAGGCTTTACGAACATTACGAACGGCAGAAGCGGGAAAA----AC-GGC 940
BSNT_01975___ 938 AATTTGATTTTGATGACATGGCTTCAGCCTGCTATGAATTGTTT---ATC 984
||||||||||||||||||||||...||.|||.||||||.||||| |.|
RBAM_011840__ 941 AATTTGATTTTGATGACATGGCCCAAGGCTGTTATGAACTGTTTCAAAGC 990
BSNT_01975___ 985 GAGCGGCCTGACCTTCTGGAACAATATCAATCTCGGTTTACGTATATCTT 1034
||||||||..||||.|..||.||.|||....|.|||.|..||||.||
RBAM_011840__ 991 ---CGGCCTGATATTCTCGCGCAGTACCAAAACAGATTTTCTCATATTTT 1037
BSNT_01975___ 1035 AATTGATGAGTTTCAGGACATTAATCCGGTTCAATACAAAATCATGCAAA 1084
.||||||||.|||||.||.||.|||||.||.||.|||||.||.|||||||
RBAM_011840__ 1038 GATTGATGAATTTCAAGATATCAATCCTGTCCAGTACAACATTATGCAAA 1087
BSNT_01975___ 1085 TGCTCGCCAGCCCGGAGCAAAACCTGTGCTGTGTCGGAGACGATGACCAG 1134
||.||||.|||||.|||.|.|||||||||||.||.||.||.||.|||||.
RBAM_011840__ 1088 TGATCGCAAGCCCAGAGAATAACCTGTGCTGCGTGGGTGATGACGACCAA 1137
BSNT_01975___ 1135 TCCATCTACGCGTTTCGCGGAAGCAATCCGTCTTTCATTCTTGATTTTCA 1184
|||||.||.|||||.||.||.||||..||||||||||||.|.||||||||
RBAM_011840__ 1138 TCCATTTATGCGTTCCGAGGCAGCAGCCCGTCTTTCATTTTAGATTTTCA 1187
BSNT_01975___ 1185 AAAGGATTATCCGGGAGCGAAGACGATCTATTTAACTGCGAACTACAGGT 1234
||||||||||||||.|||.|||||.||.||.|||||.||.||.|||.|.|
RBAM_011840__ 1188 AAAGGATTATCCGGCAGCAAAGACCATTTACTTAACGGCAAATTACCGAT 1237
BSNT_01975___ 1235 CTACGCACCCGATCGTCTCTAGTGCTGATATCGTTGTGAAAAAGAACAAA 1284
|..||||.|||||||||||.||.|||.||..|||.||.||.||.||.|||
RBAM_011840__ 1238 CGCCGCATCCGATCGTCTCAAGCGCTCATGCCGTCGTAAAGAAAAATAAA 1287
BSNT_01975___ 1285 AACAGATATGCCAAAACGCTTGAAGCGGCCCGCGATGACATTCA-GGTCC 1333
||..|.||||..|||||.|||...||.|.|...||.|.|.|||| ..|||
RBAM_011840__ 1288 AAACGGTATGAAAAAACACTTTCTGCCGTCAAAGACGGCGTTCACAATCC 1337
BSNT_01975___ 1334 CTGTGCTGTTTTATCCTTATGATGAAGAGGAAGAAGCCACAATGGTCGTT 1383
| |||.|||||||||||||.||||||||.||||||||.||.|||.|||||
RBAM_011840__ 1338 C-GTGATGTTTTATCCTTACGATGAAGAAGAAGAAGCGACCATGATCGTT 1386
BSNT_01975___ 1384 TCCGATATCAAAGAAAAAATTCAAAATGGAGCCAGTCCAGAAGACTTTGC 1433
||.|||||.|||||.||.||||||||.||.||.|||||.||.||.|||||
RBAM_011840__ 1387 TCGGATATGAAAGAGAAGATTCAAAACGGGGCGAGTCCTGACGATTTTGC 1436
BSNT_01975___ 1434 GGTTCTTTACCGCACAAACAGCGGAGGCCGTGCTATATATGAAAGGCTTC 1483
.||.||||||||.||||||||||..||.||.||.||.||||||||.||.|
RBAM_011840__ 1437 CGTACTTTACCGGACAAACAGCGCCGGACGGGCCATTTATGAAAGACTGC 1486
BSNT_01975___ 1484 ATCAATCGTCAATTCCGTATACA-GCTGACCGCGGCGTCCAATCGTTTTA 1532
|||||||.||.|||||.|| .|| ||.|||.|.|||||.||..||||.||
RBAM_011840__ 1487 ATCAATCATCGATTCCTTA-CCATGCCGACAGGGGCGTGCAGACGTTCTA 1535
BSNT_01975___ 1533 CAGCAGACGGATCGTCCGCCAGATTCTCGCCTACTTGTACGCCAGCCAAA 1582
||||.|..|.|||||.||||||||.|||||||||||.||.||.||.||.|
RBAM_011840__ 1536 CAGCCGCAGAATCGTACGCCAGATCCTCGCCTACTTATATGCGAGTCAGA 1585
BSNT_01975___ 1583 ATGAGGATGATACCGAAGCGATTAAACACTTGCTTCCCGCCTTGTTTTTA 1632
||||.||||||.|.||.|||.|.|||.||.||||.||||||||.||||||
RBAM_011840__ 1586 ATGAAGATGATCCGGATGCGGTGAAAGACCTGCTGCCCGCCTTATTTTTA 1635
BSNT_01975___ 1633 AAACAGTCCGCTTTGAATACGCTGAAGGCGCTCTCGATCACAGAGGACTG 1682
||.||.|||||..||.|.|||.|.||||||||.||.|||||.||.||.||
RBAM_011840__ 1636 AAGCAATCCGCCCTGCAAACGTTAAAGGCGCTGTCAATCACGGAAGATTG 1685
BSNT_01975___ 1683 TACCATGATCAAAGCGCTGGCCAAATTGCCTGATCTGAAGCCATTCCAGC 1732
.||.||||||||.||.|||.|.|||.|||||||.||||||||.||.||..
RBAM_011840__ 1686 CACGATGATCAAGGCACTGACGAAACTGCCTGACCTGAAGCCTTTTCAAA 1735
BSNT_01975___ 1733 TGGACAAAATCAAGAAAATCGTACCGTTTTTTGCAAGCCTCCGCACGATG 1782
|.|..||.||||||.|.|||||.||||||||.||||||.||||.||.|||
RBAM_011840__ 1736 TAGGGAAGATCAAGCAGATCGTTCCGTTTTTCGCAAGCATCCGGACAATG 1785
BSNT_01975___ 1783 AAGCCCGTAGAAGCCATCACCTTTGCAGAAGGAAAAATGGGCTTCTCCGA 1832
|||||.||.|||||||||||||||||||||.|.||||||||.||.|||||
RBAM_011840__ 1786 AAGCCGGTTGAAGCCATCACCTTTGCAGAAAGCAAAATGGGTTTTTCCGA 1835
BSNT_01975___ 1833 GTATTTAAAAAAGCGGGGCAATGAGGGCAACAAGCTGGAAAAAGGTTCCG 1882
||||||||||||.||||||||||||||.|||||.|||||||||||.||.|
RBAM_011840__ 1836 GTATTTAAAAAAACGGGGCAATGAGGGAAACAAACTGGAAAAAGGCTCTG 1885
BSNT_01975___ 1883 ATGACCTGCGCGATATCAAGGTTGTCGCCAAGAAGTTCAAAACGATTCCT 1932
||||.||..|.|||.||||.||.|.||||||.||.||||||||.|||||.
RBAM_011840__ 1886 ATGATCTCAGGGATGTCAAAGTGGCCGCCAAAAAATTCAAAACCATTCCC 1935
BSNT_01975___ 1933 GACTTTCTTGCCCACGTAGACCATATGAGGGCCGCTGAGAA----AAACA 1978
||.||||||||.||.||.||.||||||.|.||||||||||| ||
RBAM_011840__ 1936 GATTTTCTTGCGCATGTCGATCATATGCGCGCCGCTGAGAATCTGAA--- 1982
BSNT_01975___ 1979 GAACGGATGAACATGGCGTTCAGCTGATGACCATTCACCGGTCAAAAGGC 2028
|||.||||||.|.|||||..|.||..|||||||||||||.||.|||||.
RBAM_011840__ 1983 -AACCGATGAAAACGGCGTCGAACTTCTGACCATTCACCGCTCTAAAGGT 2031
BSNT_01975___ 2029 CTTGAATTCAAAACAGTCTACGTGTTAGGCACTGTAGACGGTTCGATTCC 2078
|||||||||||.||.|||||..|.||||||.|.|..|||||.|||||.||
RBAM_011840__ 2032 CTTGAATTCAATACGGTCTATATTTTAGGCGCGGCTGACGGCTCGATCCC 2081
BSNT_01975___ 2079 GCACGATTTCTCATTAGAAACGGCAAGAAAAGGAGACGAGGCCGCT---C 2125
.||.||.|||.||.|.||.|||||.|||.|.|| |||..||||| |
RBAM_011840__ 2082 CCATGACTTCGCACTTGAGACGGCGAGACAGGG---CGATCCCGCTCCGC 2128
BSNT_01975___ 2126 TTGAGGAGGAAAGACGCCTTTTATATGTAGCCATGACCCGGGCGAAACAG 2175
|.||.||.||||||||.|||.|.|||||.||.|||||..||||.|..|||
RBAM_011840__ 2129 TCGAAGAAGAAAGACGGCTTCTGTATGTCGCAATGACAAGGGCCATGCAG 2178
BSNT_01975___ 2176 CATTTATATTTGTCTTGCCCCGCTAACAGGCGCGGCAAAACAGCCAACCG 2225
|||||||||.|.|||||.|||||..|||||||.||.||||||||...|.|
RBAM_011840__ 2179 CATTTATATGTATCTTGTCCCGCGTACAGGCGGGGAAAAACAGCGCGCAG 2228
BSNT_01975___ 2226 CTCAAGATTTTTGTATCCCCTGCTACAGAAAGCAAGAC--AGCCCTTGCA 2273
||||||||||.|..|.|||||.||.|.||..|..|||| ||| |||
RBAM_011840__ 2229 CTCAAGATTTCTCGAGCCCCTTCTTCGGACGGACAGACGGAGC----GCA 2274
BSNT_01975___ 2274 -TCA----TTAA 2280
||| .|||
RBAM_011840__ 2275 CTCAGGATATAA 2286
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