Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01959 and RBAM_011740

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence pep-align/BSNT_01959___yjbX.1.9828.seq
#    -bsequence pep-align/RBAM_011740___yjbX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01959___yjbX-RBAM_011740___yjbX.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01959___yjbX-RBAM_011740___yjbX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01959___yjbX
# 2: RBAM_011740___yjbX
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 228
# Identity:     135/228 (59.2%)
# Similarity:   159/228 (69.7%)
# Gaps:          29/228 (12.7%)
# Score: 577.5
# 
#
#=======================================

BSNT_01959___      1 MSNKKRNADKKPLMYIVQPDYAETTRSSMQEIVI-KRKADKPAPPKAEEK     49
                     ||.:.|||:|||||||||.||:: |:||||:|:| ||||  |.||  ||:
RBAM_011740__      1 MSKQNRNAEKKPLMYIVQADYSD-TQSSMQDILIKKRKA--PQPP--EEE     45

BSNT_01959___     50 PAYHEKEQEEAVAQDVLQEDQKPAAEPVSQQIQEVREPENIKSQEEQKQE     99
                     | .|.|.:||...    |.:...|.||      |.:.||.....||..||
RBAM_011740__     46 P-MHGKREEECQT----QPEGAVAVEP------EKQVPEQHSRAEEAVQE     84

BSNT_01959___    100 --PQAVEETVEHEPPKAEKKEEPALEARKPEKEPEAVHSADKAEEKAPPA    147
                       .||.::|.:   |.|.|||..|     .||||||||:| ..|||.|| 
RBAM_011740__     85 VPAQAEQDTAK---PDAAKKEPDA-----AEKEPEAVHNA-APEEKVPP-    124

BSNT_01959___    148 RKVKKPMSKMTIHEKIDFLTKLPHNMPRALCLIEANGRTYRGVIVGRRND    197
                     ::||||||:|:|.|||||||||||||||.||||||||:|||||||||:|:
RBAM_011740__    125 KRVKKPMSRMSILEKIDFLTKLPHNMPRTLCLIEANGKTYRGVIVGRKNN    174

BSNT_01959___    198 SVLLRTTGNGAPTELAIDDITSLHPLGF    225
                     ::.||||.||||.|||||||||||||||
RBAM_011740__    175 AIFLRTTSNGAPAELAIDDITSLHPLGF    202


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