Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01943 and RBAM_011630

See DNA alignment / Visit BSNT_01943 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence pep-align/BSNT_01943___yjbO.1.9828.seq
#    -bsequence pep-align/RBAM_011630___yjbO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01943___yjbO-RBAM_011630___yjbO.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01943___yjbO-RBAM_011630___yjbO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01943___yjbO
# 2: RBAM_011630___yjbO
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     215/300 (71.7%)
# Similarity:   251/300 (83.7%)
# Gaps:           4/300 ( 1.3%)
# Score: 1134.0
# 
#
#=======================================

BSNT_01943___      1 MEHFFIRKNITSAEDGMTVKEYAGELGISKRLLTDIKFGGGDLQINGEHV     50
                     |::|||:||:|:.|.|||||||..:||||||||.|||||||||.:|||||
RBAM_011630__      1 MDNFFIQKNMTAREAGMTVKEYTAQLGISKRLLADIKFGGGDLLVNGEHV     50

BSNT_01943___     51 TVKYVLKEGDLLIVKFPEEQVSETLLAEPIPLDILYEDEHVLVINKQPYV    100
                     ||:.||.|||:|.::||:|.|||||:.||:||||||||:||||:||||||
RBAM_011630__     51 TVRAVLAEGDVLKIEFPKEHVSETLVPEPVPLDILYEDDHVLVVNKQPYV    100

BSNT_01943___    101 SSIPSREHPSGSIANGIIDHYQKNGVRATVHLVTRLDRDTSGVMLVAKHR    150
                     ||||||||||.|||||:|.||:|:||::||||||||||||||.||:||||
RBAM_011630__    101 SSIPSREHPSESIANGVISHYRKSGVQSTVHLVTRLDRDTSGAMLIAKHR    150

BSNT_01943___    151 FAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTV    200
                     .:||:||:|||.|||.|||.|||||.|.|.||||||||||..||||||.|
RBAM_011630__    151 LSHSLLSAAQKKGLVSRRYLAVVHGIMLQKEGTVDAPIGRKHDSIIERMV    200

BSNT_01943___    201 TPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDT    250
                     ||:||:|||||....|....|..||:||||||||||||||||||||.|||
RBAM_011630__    201 TPEGQRAVTHFQTEKAGHAFTLAALRLETGRTHQIRVHMSYLGHPLVGDT    250

BSNT_01943___    251 LYGGTRQEIGRQALHSEHLSFIHPLTQKNMTFHAPLPQDMRKLIKGENH-    299
                     ||||..:.|.|||||||.|||:||:|.:.:.||||:|.||:.||:   | 
RBAM_011630__    251 LYGGKNEGIARQALHSERLSFVHPMTGETLVFHAPVPDDMKTLIE---HM    297


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