Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01943 and RBAM_011630

See Amino acid alignment / Visit BSNT_01943 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_01943___yjbO.1.9828.seq
#    -bsequence dna-align/RBAM_011630___yjbO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01943___yjbO-RBAM_011630___yjbO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01943___yjbO-RBAM_011630___yjbO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01943___yjbO
# 2: RBAM_011630___yjbO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 942
# Identity:     648/942 (68.8%)
# Similarity:   648/942 (68.8%)
# Gaps:          90/942 ( 9.6%)
# Score: 2137.0
# 
#
#=======================================

BSNT_01943___      1 GTGGAGCATTTTTTTATCAGAAAGAACATTACTTCCGCTGAGGACGGGAT     50
                     .||||..|.|||||||||..|||||||||.|||.||...||.|.|||.||
RBAM_011630__      1 TTGGACAACTTTTTTATCCAAAAGAACATGACTGCCCGGGAAGCCGGCAT     50

BSNT_01943___     51 GACTGTAAAAGAATATGCCGGTG-AACTGGGAATTTCGAAACGTCT----     95
                     |||.|||||||||||| .|||.| |.||.||.|||||.||.||.||    
RBAM_011630__     51 GACGGTAAAAGAATAT-ACGGCGCAGCTCGGCATTTCAAAGCGGCTTCTC     99

BSNT_01943___     96 GCTGACCGATATTAAGTTTGGCGGGGGAGACCTGCAGATTAACGGTGAGC    145
                     ||||||    |||||.||.||||||||||||||||...|.|||||.||||
RBAM_011630__    100 GCTGAC----ATTAAATTCGGCGGGGGAGACCTGCTTGTGAACGGAGAGC    145

BSNT_01943___    146 ATGTGACGGTCAAATACGTTTT----GAAAGAGGGAGATCTTCTT---AT    188
                     ||||.||.|||.....|||.||    |||    |||||..|.|||   ||
RBAM_011630__    146 ATGTAACCGTCCGCGCCGTGTTAGCGGAA----GGAGACGTGCTTAAGAT    191

BSNT_01943___    189 CGTGAAGTTTCCTGAGGAACAGGTGAGCGAGACGCTGCTGGCAGAGCCTA    238
                       |||| |||||..||||.||.|||||.||.|||||..||.|.|||||..
RBAM_011630__    192 --TGAA-TTTCCGAAGGAGCATGTGAGTGAAACGCTTGTGCCTGAGCCGG    238

BSNT_01943___    239 TTCCGCTCGATATCCTTTATGAGGATGAACATGTGCTTGTGATAAACAAG    288
                     ||||.||.|||||.||||||||.|||||.||||||||||||.|.||.||.
RBAM_011630__    239 TTCCTCTTGATATTCTTTATGAAGATGACCATGTGCTTGTGGTCAATAAA    288

BSNT_01943___    289 CAGCCGTATGTGTCATCAATCCCTTCGAGAGAGCACCCCTCCGGCAGCAT    338
                     |||||||||||.||.|||||.||.||.|||||.|||||.||.|..|||||
RBAM_011630__    289 CAGCCGTATGTCTCCTCAATTCCATCAAGAGAACACCCGTCGGAGAGCAT    338

BSNT_01943___    339 TGCCAATGGAATTATTGAT----CATTATCAAAAAAACGGAGTGAGGGCG    384
                     .||.||.||    |.||||    ||.||.|.|||||.|||.|||....|.
RBAM_011630__    339 CGCTAACGG----AGTGATCAGCCACTACCGAAAAAGCGGTGTGCAATCA    384

BSNT_01943___    385 ACAGTACATCTTGTCACCCGGCTAGACCGGGATACATCAGGTGTCATGCT    434
                     ||.||.||||||||||||||.||.|||.||||||||||.||.|..|||||
RBAM_011630__    385 ACGGTTCATCTTGTCACCCGCCTTGACAGGGATACATCGGGGGCGATGCT    434

BSNT_01943___    435 TGTTGCCAAGCATCGATTTGCCCACTCCATTTTATCGTCTGCGCAAAAAA    484
                     ..|.|||||.|||||..||.||||.||..||||.|||.|.|||||.||.|
RBAM_011630__    435 CATCGCCAAACATCGGCTTTCCCATTCTCTTTTGTCGGCAGCGCAGAAGA    484

BSNT_01943___    485 ACGGCCTTGTGAAACGCCGGTATGCGGCAGTGGTTCACGGGCGGATGGCA    534
                     |.||.|||||.|...|.||||||...||.||.||.|||||....|||...
RBAM_011630__    485 AGGGGCTTGTCAGCAGGCGGTATCTCGCTGTCGTACACGGTATCATGCTG    534

BSNT_01943___    535 CAGATGGAGGGAACAGTCGATGCTCCGATTGGCAGACATCCTGACAGTAT    584
                     ||||.|||.|||||.||.||.||.||.||.||.|||.|.|..||||||||
RBAM_011630__    535 CAGAAGGAAGGAACGGTGGACGCGCCCATCGGAAGAAAACACGACAGTAT    584

BSNT_01943___    585 TATTGAACGGACGGTAACACCGGACGGCCA--GAAGGCTGTTACTCATTT    632
                     ||||||.||||.||||||.|||||.||.||  ||  ||.||.||.|||||
RBAM_011630__    585 TATTGAGCGGATGGTAACGCCGGAGGGACAACGA--GCGGTGACGCATTT    632

BSNT_01943___    633 TTACGTCACATGTGCAAATG-ATGACATGACCT---CGGTGGCA---TTG    675
                          |||.|.| |.|||.| ..|||||| |.|   ||.|.|||   .||
RBAM_011630__    633 -----TCAAACG-GAAAAAGCGGGACATG-CGTTTACGCTTGCAGCCCTG    675

BSNT_01943___    676 CAGCTTGAGACTGGACGAACCCATCAAATTCGTGTTCATATGAGCTATCT    725
                     |.|||.||.||.||.||.||.||||||||.||.||.||.||||||||.||
RBAM_011630__    676 CGGCTGGAAACGGGGCGGACGCATCAAATCCGGGTGCACATGAGCTACCT    725

BSNT_01943___    726 CGGGCACCCGTT-GTGCGGCGATACACTGTACGGCGGAACGAGACAGGAA    774
                     |||.|||||||| || |||.|||||||||||||||||||..|...|||.|
RBAM_011630__    726 CGGCCACCCGTTAGT-CGGTGATACACTGTACGGCGGAAAAAATGAGGGA    774

BSNT_01943___    775 ATTGGCCGGCAGGCTCTGCACAGCGAGCATCTTTCATTTATCCATCCGCT    824
                     ||||..|||||||||||.|||||.||||..||||||||..|.||.||..|
RBAM_011630__    775 ATTGCGCGGCAGGCTCTTCACAGTGAGCGGCTTTCATTCGTACACCCCAT    824

BSNT_01943___    825 GACACAGAAGAACATGACG------TTTCATGCTCCACTGCCTCAGGACA    868
                     |  ||.|.||||    |||      |||||.||.||..|||||.|.||.|
RBAM_011630__    825 G--ACCGGAGAA----ACGCTCGTTTTTCACGCCCCGGTGCCTGACGATA    868

BSNT_01943___    869 TGAGAAAACTGATAAAAGGAGAGAATCATTGA----------    900
                     |  ||||||              |.|.|||||          
RBAM_011630__    869 T--GAAAAC--------------ATTAATTGAACACATGTAA    894


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01943 and RBAM_011630

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
