Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01933 and RBAM_011560

See DNA alignment / Visit BSNT_01933 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence pep-align/BSNT_01933___yjbH.1.9828.seq
#    -bsequence pep-align/RBAM_011560___yjbH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01933___yjbH-RBAM_011560___yjbH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01933___yjbH-RBAM_011560___yjbH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01933___yjbH
# 2: RBAM_011560___yjbH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     259/300 (86.3%)
# Similarity:   281/300 (93.7%)
# Gaps:           1/300 ( 0.3%)
# Score: 1376.0
# 
#
#=======================================

BSNT_01933___      1 MTNYQHELYFAHCHGHPKKPLEIYMFVDPLCPECWSLEPVIKKLKIRYGR     50
                     |||||||.|||||||||||||||||||||||||||||||.||||||:|||
RBAM_011560__      1 MTNYQHEQYFAHCHGHPKKPLEIYMFVDPLCPECWSLEPAIKKLKIKYGR     50

BSNT_01933___     51 FFTLRIIASASLTALNK-KRKKHLLAEAWEKIASRSGMSCDGNVWFEQDQ     99
                     |||||||.|||:|.||| |||||||||||||||:||||.|||::|.||||
RBAM_011560__     51 FFTLRIIVSASITTLNKQKRKKHLLAEAWEKIANRSGMPCDGSLWLEQDQ    100

BSNT_01933___    100 PLSSPYMAALAFKAAELQGRKAGMQFLRNMQESLFVSKKNITDENVLLEI    149
                     ||||||:||||.|||||||||||:.|||:|||||||||:|||||:|||||
RBAM_011560__    101 PLSSPYLAALALKAAELQGRKAGILFLRSMQESLFVSKQNITDEDVLLEI    150

BSNT_01933___    150 AENTSLDLEEFKKDLHSQSAVKALQCDMKIAAEMDVSVNPTLTFFNTQHE    199
                     ||.|.||:||||:|||||||||||||||||||||||:|||||||||:.|:
RBAM_011560__    151 AEKTKLDVEEFKRDLHSQSAVKALQCDMKIAAEMDVTVNPTLTFFNSLHD    200

BSNT_01933___    200 DEGLKVPGSYSYDVYEEILFEMLGDEPKPSETPPLECFIEYFRFVASKEI    249
                     ||||||||:|||||||||||||||||||||||||||||||||||||||||
RBAM_011560__    201 DEGLKVPGNYSYDVYEEILFEMLGDEPKPSETPPLECFIEYFRFVASKEI    250

BSNT_01933___    250 ALVYDLSLEEVEKEMKKLAFAKKVAKVEAKHGMFWKSLSTYSDEYQSCEK    299
                     |||||||||||||||||||||||||:||||||:|||||:...::...|:.
RBAM_011560__    251 ALVYDLSLEEVEKEMKKLAFAKKVARVEAKHGLFWKSLAGTQEDVTCCDH    300


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