Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01933 and RBAM_011560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_01933___yjbH.1.9828.seq
# -bsequence dna-align/RBAM_011560___yjbH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01933___yjbH-RBAM_011560___yjbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01933___yjbH-RBAM_011560___yjbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01933___yjbH
# 2: RBAM_011560___yjbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity: 714/924 (77.3%)
# Similarity: 714/924 (77.3%)
# Gaps: 45/924 ( 4.9%)
# Score: 2830.0
#
#
#=======================================
BSNT_01933___ 1 TTGACAAACTATCAGCATGAGCTATACTTCGCCCATTGCCACGGTCATCC 50
|||||.||.|||||||||||||.|||||||||||||||||||||.|||||
RBAM_011560__ 1 TTGACGAATTATCAGCATGAGCAATACTTCGCCCATTGCCACGGACATCC 50
BSNT_01933___ 51 AAAAAAACCGCTTGAAATTTATATGTTTGTAGACCCTTTATGTCCTGAAT 100
||||||||||||.||||||||.||||||||.|||||||||||||||||||
RBAM_011560__ 51 AAAAAAACCGCTCGAAATTTACATGTTTGTCGACCCTTTATGTCCTGAAT 100
BSNT_01933___ 101 GCTGGTCCTTAGAGCCCGTCATCAAAAAGCTGAAAATCAGATACGGACGT 150
|||||||..|.|||||||.|||.|||||..|.|||||||.||||||||||
RBAM_011560__ 101 GCTGGTCGCTGGAGCCCGCCATAAAAAAATTAAAAATCAAATACGGACGT 150
BSNT_01933___ 151 TTTTTCACCTTACGCATTATCGCTTCCGCAAGCCTTAC--CGCTTTAAAT 198
|||||.||..|.||.||.||.|.||||||.|||.|||| ||| |.|||
RBAM_011560__ 151 TTTTTTACGCTGCGGATCATAGTTTCCGCGAGCATTACAACGC--TGAAT 198
BSNT_01933___ 199 A---AAAAGCGAAAAAAGCATCTTCTCGCAGAAGCATGGGAAAAGATCGC 245
| |||||||.|||||.||.||.||.||.|||||.||||||||.||.||
RBAM_011560__ 199 AAGCAAAAGCGGAAAAAACACCTCCTTGCCGAAGCTTGGGAAAAAATTGC 248
BSNT_01933___ 246 GAGCCGCTCTGGCATGTCATGTGACGGCAATGTCTGGTTCGAACAGGATC 295
||.|||.||.||.|||.|.||||||||.|...|.|||.|.||.|||||||
RBAM_011560__ 249 GAACCGTTCCGGGATGCCCTGTGACGGAAGCCTTTGGCTTGAGCAGGATC 298
BSNT_01933___ 296 AGCCGCTTTCATCGCCTTATATGGCTGCTCTCGCTTTTAAAGCAGCCGAA 345
||||.|||||||||||.||..|.||.||.||||||||.|||||.||||||
RBAM_011560__ 299 AGCCTCTTTCATCGCCCTACCTTGCCGCACTCGCTTTAAAAGCGGCCGAA 348
BSNT_01933___ 346 TTGCAAGGACGAAAAGCCGGCATGCAATTTCTCAGAAATATGCAGGAGAG 395
.||||.|||.|||||||.|||||.|..||||||.|.|..||||||||.||
RBAM_011560__ 349 CTGCAGGGAAGAAAAGCGGGCATTCTGTTTCTCCGCAGCATGCAGGAAAG 398
BSNT_01933___ 396 CCTATTTGTTTCAAAGAAAAATATTACGGATGAAAACGTGCTTTTGGAGA 445
|||.||||||||.|||.|.|||||||||||||||.||||.|||||.||||
RBAM_011560__ 399 CCTGTTTGTTTCCAAGCAGAATATTACGGATGAAGACGTTCTTTTAGAGA 448
BSNT_01933___ 446 TTGCTGAAAATAC-AAGTCTCGATCTTGAAGAATTCAAAAAAGATCTGCA 494
||||.|||||.|| ||.| |.|||.|||||||||||||....||.||.||
RBAM_011560__ 449 TTGCCGAAAAGACGAAAT-TGGATGTTGAAGAATTCAAGCGCGACCTCCA 497
BSNT_01933___ 495 TTCTCAAAGCGCGGTCAAGGCGCTTCAATGTGACATGAAAATTGCTGCTG 544
|||.|||||||||||.||.||||||||.||.||.||||||||.||.||.|
RBAM_011560__ 498 TTCGCAAAGCGCGGTAAAAGCGCTTCAGTGCGATATGAAAATCGCGGCGG 547
BSNT_01933___ 545 AGATGGATGTTTCTGTTAATCCGACACTGACGTTTTTTAATACGCAGCAT 594
|.|||||.||..|.||.||.||||||.|||||||.|||||.|..|.||||
RBAM_011560__ 548 AAATGGACGTCACCGTCAACCCGACATTGACGTTCTTTAACAGCCTGCAT 597
BSNT_01933___ 595 GAGGATGAAGGGCTTAAAGTTCCTGGCAGCTACTCATATGATGTATATGA 644
||.|||||||||||.||.|||||.||||.|||.||.|||||.|||||.||
RBAM_011560__ 598 GATGATGAAGGGCTGAAGGTTCCCGGCAACTATTCTTATGACGTATACGA 647
BSNT_01933___ 645 AGAAATTTTATTTGAGATGCTTGGCGACGAGCCGAAGCCGTCGGAAACAC 694
|||.||.|||||.||.|||||.||.||.||.||.||.||.||.|||||.|
RBAM_011560__ 648 AGAGATCTTATTCGAAATGCTCGGGGATGAACCAAAACCTTCTGAAACGC 697
BSNT_01933___ 695 CGCCTTTAGAATGTTTTATTGAATATTTCCGCTTCGTTGCCTCTAAAGAA 744
|||||||.||||||||.||||||||||||||.||.||.||.||.||||||
RBAM_011560__ 698 CGCCTTTGGAATGTTTCATTGAATATTTCCGGTTTGTCGCATCGAAAGAA 747
BSNT_01933___ 745 ATTGCGCTTGTATATGATCTGAGCCTTGAAGAGGTAGAAAAAGAAATGAA 794
||.||.||.||.||||||.||||.||.|||||.||.||||||||||||||
RBAM_011560__ 748 ATCGCACTCGTTTATGATTTGAGTCTAGAAGAAGTTGAAAAAGAAATGAA 797
BSNT_01933___ 795 AAAACTGGCGTTTGCTAAAAAGGTTGCCAAAGTGGAAGCCAAACACGGAA 844
|||||||||.||.||.||||||||.||||.|||||||||.||.|||||..
RBAM_011560__ 798 AAAACTGGCATTCGCCAAAAAGGTCGCCAGAGTGGAAGCAAAGCACGGTC 847
BSNT_01933___ 845 TGTTTTGGAAGTCTCT----------CAG--------CACTTATTCTGAT 876
||||||||||.||||| ||| |||.|.||.||||
RBAM_011560__ 848 TGTTTTGGAAATCTCTGGCCGGCACCCAGGAGGATGTCACCTGTTGTGAT 897
BSNT_01933___ 877 GAATATCAATCATGTGAAAAATAG 900
.|.||.
RBAM_011560__ 898 CATTAA------------------ 903
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