Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01842 and RBAM_010960

See DNA alignment / Visit BSNT_01842 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence pep-align/BSNT_01842___yisP.1.9828.seq
#    -bsequence pep-align/RBAM_010960___yisP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01842___yisP-RBAM_010960___yisP.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01842___yisP-RBAM_010960___yisP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01842___yisP
# 2: RBAM_010960___yisP
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     118/270 (43.7%)
# Similarity:   153/270 (56.7%)
# Gaps:          26/270 ( 9.6%)
# Score: 551.0
# 
#
#=======================================

BSNT_01842___      1 MKEIKEAYQQCGQIVSAREPACYKAFSFLPLKQRQAAWAVMAFCHTAANA     50
                     |.|    |:.|.|:..|..|...:.||.||.|.|:|||||:|..|.|...
RBAM_010960__      1 MTE----YETCAQLAEAHFPLYKRTFSSLPPKNRRAAWAVLALFHEADRL     46

BSNT_01842___     51 DEKALSAIEAEAEDVFSGTYNGNHFLWKAFGHAYQTFTLDSKPFREFIAA    100
                     |.:.|...|..|:|..:|: ..:.|||:|.....|.|.|:.:|.|||||.
RBAM_010960__     47 DVQELGGFEQAAQDFLNGS-RADGFLWEALTDVRQQFALEEEPLREFIAG     95

BSNT_01842___    101 Q--KAEDKPFGNLDELLMHAYQTGGAAGLMLLPIMARRHQEQLTHAAGSL    148
                     |  ..|...:...|:|||:|.|||||.||:|||:.|||:|.:|.|||.||
RBAM_010960__     96 QISDREKVTYQEFDDLLMYAGQTGGALGLLLLPVCARRNQGKLRHAAVSL    145

BSNT_01842___    149 GLAIQLIRILRDIGTGQQQKSRIPREVMQQFGYTEADLQKGTVNKAFTMT    198
                     |.||||.|:|.::.|.::.|.|:||:||:||||||.:|:..||||||...
RBAM_010960__    146 GAAIQLTRVLLEVHTDERAKKRLPRQVMKQFGYTEEELESHTVNKAFMNV    195

BSNT_01842___    199 WEYIAFEAEAYLEECQDALPLFPQYSQKTVKAALHLYRAVLEKIRAKQHD    248
                     |||||||||||.||..:.|.|||.||:..|......||:.|..:|.:...
RBAM_010960__    196 WEYIAFEAEAYFEEASEELELFPLYSRPAVTGLAAHYRSELGDMRQQLSQ    245

BSNT_01842___    249 VFQLHFALTETEVKQILSDI    268
                     .                   
RBAM_010960__    246 A-------------------    246


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.