Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01842 and RBAM_010960

See Amino acid alignment / Visit BSNT_01842 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_01842___yisP.1.9828.seq
#    -bsequence dna-align/RBAM_010960___yisP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01842___yisP-RBAM_010960___yisP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01842___yisP-RBAM_010960___yisP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01842___yisP
# 2: RBAM_010960___yisP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity:     501/887 (56.5%)
# Similarity:   501/887 (56.5%)
# Gaps:         226/887 (25.5%)
# Score: 1172.5
# 
#
#=======================================

BSNT_01842___      1 ATGAAAGAGATAAAAGAAGCCTATCAGCAATGCGGCCAGATCGTC-AGCG     49
                     ||||..||   |.|.|||.|         |||||.||||.|.|.| ||  
RBAM_010960__      1 ATGACCGA---ATACGAAAC---------ATGCGCCCAGCTTGCCGAG--     36

BSNT_01842___     50 CCCGCGAACCAGCCTGT-TACAAA-GCATTTTCGTTTCTTCCGCTG----     93
                        |||.||...|||.| ||.||| |.|.||||   ||.||| |||    
RBAM_010960__     37 ---GCGCACTTTCCTTTATATAAACGGACTTTC---TCATCC-CTGCCGC     79

BSNT_01842___     94 --AAGCAAAGGCAGGCAGCTTGGGCGGTTATGGCGTT-TTGCCATACG--    138
                       ||..|.||||.|||.||.||||||||..|.||.|| ||.|   |||  
RBAM_010960__     80 CAAAAAACAGGCGGGCCGCATGGGCGGTGCTTGCTTTGTTTC---ACGAA    126

BSNT_01842___    139 GCAGCCAATGCG----GATGAGAAGGCGTTATCT----GCCATTGAAGCG    180
                     ||.|.|    ||    ||||.|.|||    |.||    |...|||||..|
RBAM_010960__    127 GCTGAC----CGGCTTGATGTGCAGG----AACTTGGAGGATTTGAACAG    168

BSNT_01842___    181 GAGGCGGAAGATGTTTTTTCCGGTACGTATAACGGGAATCA---------    221
                     |.|||..||||    .||||.|        ||||||  |||         
RBAM_010960__    169 GCGGCACAAGA----CTTTCTG--------AACGGG--TCACGGGCCGAC    204

BSNT_01842___    222 --TTTTTTGTGGAAGGCTTTCGGCCATG---CGTACCAAACCTTTACACT    266
                       .|||||||||.||||..||..|.|||   .|.|.|||   |||.|.||
RBAM_010960__    205 GGCTTTTTGTGGGAGGCGCTCACCGATGTGCGGCAGCAA---TTTGCGCT    251

BSNT_01842___    267 GGACAGCA-AGCCATTCCGTGAGTTCATTGCCG-------------CACA    302
                     .|| ||.| ||||.||.||||||||.||.||||             ||.|
RBAM_010960__    252 TGA-AGAAGAGCCGTTACGTGAGTTTATCGCCGGCCAAATCTCTGACAGA    300

BSNT_01842___    303 GAAAGCGGAAGATAAACCGTTTGGAAACCTTGATGAATTGCTCATGCACG    352
                     ||||    ||| |||  |||.|..|.|..|||||||..||||.|||.|.|
RBAM_010960__    301 GAAA----AAG-TAA--CGTATCAAGAGTTTGATGACCTGCTGATGTATG    343

BSNT_01842___    353 CATACCAGACAGGCGGCGCAGCCGGATTGATGCTGCTCCCGATTATG-GC    401
                     |...|||.||||||||.||...|||..||.|||||||.|||.|| || ||
RBAM_010960__    344 CGGGCCAAACAGGCGGAGCCCTCGGCCTGCTGCTGCTGCCGGTT-TGCGC    392

BSNT_01842___    402 GCGCCGGCATCA--GGAA---CAGCTGACACATGCAGCCGGTTCTCTCGG    446
                     |||||||.|.||  ||||   |.||     ||||||||||.|||..|.||
RBAM_010960__    393 GCGCCGGAACCAAGGGAAACTCCGC-----CATGCAGCCGTTTCATTAGG    437

BSNT_01842___    447 TTTAGCGATTCAGCTGATTCG---GATTCTGAGAG----ATATCGGCACT    489
                     ....||.||||||||||..||   |.||||| |||    ||| ||| ||.
RBAM_010960__    438 AGCTGCCATTCAGCTGACCCGGGTGCTTCTG-GAGGTCCATA-CGG-ACG    484

BSNT_01842___    490 GGCCAACAGCAAAAAAGCCGTATCCCTCGGGAAGTAATGCAGCAATTCGG    539
                     .||   ..||.|||||| |||.||||.||..|.||.|||.||||||||||
RBAM_010960__    485 AGC---GGGCGAAAAAG-CGTCTCCCGCGCCAGGTGATGAAGCAATTCGG    530

BSNT_01842___    540 CTATACAGAGGCTGATCT------CCAAAAAGGCACCGTAAATAAGGCGT    583
                     ||||||.||.|..||.||      |||      .|||||.||.||.||.|
RBAM_010960__    531 CTATACGGAAGAAGAGCTGGAGAGCCA------TACCGTCAACAAAGCTT    574

BSNT_01842___    584 TCA-CAATG-ACGTGGGAGTATATCGCTTTTGAAGCGGAAGCCTACCTTG    631
                     |.| .|||| |  ||||||||.|||||.||.||.||.||.||.||..|.|
RBAM_010960__    575 TTATGAATGTA--TGGGAGTACATCGCATTCGAGGCCGAGGCGTATTTCG    622

BSNT_01842___    632 AAGA---GTGTCAGGATGCCTTGCCGCTATTTCCGCAGTATTCTCAAAAA    678
                     |.||   ||.|.|.|| ||  ||..|||.||||||  .|||.|||||   
RBAM_010960__    623 AGGAGGCGTCTGAAGA-GC--TGGAGCTGTTTCCG--TTATACTCAA---    664

BSNT_01842___    679 ACGGTGAAAGCTGCTCTTCATTTGTACCGGGCTGTTTTAG----AAAAAA    724
                                .||.|..|.|   ||||||     |||||    |.|..|
RBAM_010960__    665 -----------GGCCCGCCGT---TACCGG-----TTTAGCGGCACATTA    695

BSNT_01842___    725 TCCGGGCGAAGCAGCACGATGTATTT----CAACTTCACTTCGCTCTCAC    770
                      ||||.|  || |||.||.|| |..|    ||||       .|||.||||
RBAM_010960__    696 -CCGGTC--AG-AGCTCGGTG-ACATGAGACAAC-------AGCTTTCAC    733

BSNT_01842___    771 AGAGACCGAAGTGAAGCAGATTCTCTCTGATATCTAA    807
                                  |||||                |||
RBAM_010960__    734 -------------AAGCA----------------TAA    741


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01842 and RBAM_010960

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
