Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01820 and RBAM_010850

See DNA alignment / Visit BSNT_01820 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence pep-align/BSNT_01820.1.9828.seq
#    -bsequence pep-align/RBAM_010850___gerPE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01820-RBAM_010850___gerPE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01820-RBAM_010850___gerPE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01820
# 2: RBAM_010850___gerPE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 133
# Identity:      69/133 (51.9%)
# Similarity:    92/133 (69.2%)
# Gaps:          22/133 (16.5%)
# Score: 371.0
# 
#
#=======================================

BSNT_01820         1 --------------------MFQVGDTNEIDMSVKVFAVQRSLSTFYNNE     30
                                         :||.||||||:|.:||.|.||:::.:.::|
RBAM_010850__      1 MLKRISRLRNAKINSVGIASVFQAGDTNEINMRIKVLADQRTIALYRDDE     50

BSNT_01820        31 GSFNKKEYQIFQQQAVKPIPETGVQSAFCHEVPAIYVRSIKIQGVSASSV     80
                     |||||||||||:|.||.|:||||||||||||.|:|.||::|:||||::||
RBAM_010850__     51 GSFNKKEYQIFRQPAVMPLPETGVQSAFCHENPSIRVRNVKVQGVSSASV    100

BSNT_01820        81 LHAGSASLIRGDARIKHIRQIQSPRSQSPAKNI    113
                     :..||.|::.||:|:||||||.:|.|||...  
RBAM_010850__    101 VQIGSTSIVLGDSRLKHIRQIVTPSSQSQQP--    131


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