Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03893 and RBAM_010640

See DNA alignment / Visit BSNT_03893 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_03893___yrpD.1.9828.seq
#    -bsequence pep-align/RBAM_010640___yrpD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03893___yrpD-RBAM_010640___yrpD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03893___yrpD-RBAM_010640___yrpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03893___yrpD
# 2: RBAM_010640___yrpD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity:     183/244 (75.0%)
# Similarity:   205/244 (84.0%)
# Gaps:          10/244 ( 4.1%)
# Score: 929.0
# 
#
#=======================================

BSNT_03893___      1 -MIGGNNDDEKRSACGCAYGNRAFGTCAVDVPGIISPKTAEAASQLTDGI     49
                      |:      :|....|.......||||..::||:|||.||||||||:.||
RBAM_010640__      1 MMM------KKGLFAGVLTTAVLFGTCTAEIPGLISPNTAEAASQLSKGI     44

BSNT_03893___     50 GGRAYLNSNGAILVTKIQLPSSTQVSNGTAYIYSGFSGGTESDIGLQYSD     99
                     ||||||||.|::||||||||||.|||||||||||||:||||:||||||||
RBAM_010640__     45 GGRAYLNSTGSVLVTKIQLPSSIQVSNGTAYIYSGFTGGTEADIGLQYSD     94

BSNT_03893___    100 KYNVWKPYMKVGSKGQDQVQYLEGGSQFTNTKGFRPGSTVQLTIYKNLNG    149
                     .|:||||.||||||||.||:||||.||||.||||||||||||||||||||
RBAM_010640__     95 TYHVWKPIMKVGSKGQGQVKYLEGESQFTYTKGFRPGSTVQLTIYKNLNG    144

BSNT_03893___    150 NTRATYWGTNNAGYNGRLISEISKTNVGSISKWKALATVATTG--SRQSI    197
                     |||||||||||.||.||:|||:::|||||:||||||||||.|.  .|..|
RBAM_010640__    145 NTRATYWGTNNDGYTGRIISELAQTNVGSVSKWKALATVAVTSEDQRPYI    194

BSNT_03893___    198 KSNFSTSFTNITIDNKAITPVIDTQDFAKVTVSGNSVSLSVVKN    241
                     ||||||:||||||||||:|||||||||||:||||:|||:|||| 
RBAM_010640__    195 KSNFSTAFTNITIDNKAVTPVIDTQDFAKLTVSGSSVSMSVVK-    237


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