Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03893 and RBAM_010640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_03893___yrpD.1.9828.seq
# -bsequence dna-align/RBAM_010640___yrpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03893___yrpD-RBAM_010640___yrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03893___yrpD-RBAM_010640___yrpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03893___yrpD
# 2: RBAM_010640___yrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 734
# Identity: 572/734 (77.9%)
# Similarity: 572/734 (77.9%)
# Gaps: 28/734 ( 3.8%)
# Score: 2251.5
#
#
#=======================================
BSNT_03893___ 1 ATGATAGGGGGAAATAATGATGATGAAAAAAGGTCTGCTTGCGGGTGCGC 50
|||||||||||||||||.||..|||||||||.||
RBAM_010640__ 1 ----------------ATGATGATGAAAAAAGGGCTTTTTGCGGGTGTGC 34
BSNT_03893___ 51 TTACGGCAACCGTGCT-TTTGGCACATGTGCAGTAGATGTGCCGGGTATT 99
|.||..||.||||.|| ||.|||||||||.|.|..||..|.|||||..|.
RBAM_010640__ 35 TCACTACAGCCGTTCTATTCGGCACATGTACGGCGGAAATTCCGGGGTTG 84
BSNT_03893___ 100 ATTAGTCCAAAAACCGCAGAAGCTGCATCACAGCTAACTGATGGAATCGG 149
||.|||||.||.||.||.|||||.||.||.|||||.|...|.||||||||
RBAM_010640__ 85 ATCAGTCCCAATACGGCGGAAGCGGCGTCTCAGCTCAGCAAAGGAATCGG 134
BSNT_03893___ 150 CGGGAGGGCTTACTTGAACAGTAATGGTGCCATTCTTGTTACGAAAATCC 199
|||.|||||.|||.|||||||.|..||..|..||||.||.||||||||.|
RBAM_010640__ 135 CGGAAGGGCCTACCTGAACAGCACAGGCTCAGTTCTCGTCACGAAAATTC 184
BSNT_03893___ 200 AGCTTCCTAGCTCCACTCAGGTTTCAAATGGGACAGCCTACATCTACTCT 249
|||||||.|||||.|.|||.||.|||||||||||||||||.||.|||||.
RBAM_010640__ 185 AGCTTCCAAGCTCAATTCAAGTGTCAAATGGGACAGCCTATATTTACTCA 234
BSNT_03893___ 250 GGTTTTAGCGGAGGCACAGAATCCGATATTGGGCTTCAGTACAGTGATAA 299
||.||||.||||||||||||..|.|||||.|||||||||||||||||.|.
RBAM_010640__ 235 GGATTTACCGGAGGCACAGAGGCTGATATCGGGCTTCAGTACAGTGACAC 284
BSNT_03893___ 300 ATATAATGTATGGAAACC-ATATATGAAAGTTGGTTCAAAAGGACAGGAT 348
.|||.||||||||||||| || .||||||||.||||||||.|||||.|..
RBAM_010640__ 285 CTATCATGTATGGAAACCGAT-CATGAAAGTCGGTTCAAAGGGACAAGGC 333
BSNT_03893___ 349 CAGGTTCAGTACCTCGAAGGAGGAAGCCAATTCACGAATACGAAAGGCTT 398
|||||..||||.||.|||||||.||||||||||||..|||||||||||||
RBAM_010640__ 334 CAGGTCAAGTATCTGGAAGGAGAAAGCCAATTCACCTATACGAAAGGCTT 383
BSNT_03893___ 399 CCGTCCCGGCAGCACCGTACAACTTACCATCTACAAAAACCTTAACGGCA 448
|||.|||||||||||||||||.||.||||||||||||||.||.|||||||
RBAM_010640__ 384 CCGGCCCGGCAGCACCGTACAGCTGACCATCTACAAAAATCTGAACGGCA 433
BSNT_03893___ 449 ATACCCGCGCTACATACTGGGGCACGAACAATGCCGGATACAACGGCCGT 498
||||||||||.|||||||||||||||||.||||.||||||||.||||||.
RBAM_010640__ 434 ATACCCGCGCCACATACTGGGGCACGAATAATGACGGATACACCGGCCGC 483
BSNT_03893___ 499 CTCATTTCAGAAATCAGCAAAACAAATGTCGGCTCCATCTCCAAATGGAA 548
.||||.||||||.||..|.||||||||||.|||||..||||.||||||||
RBAM_010640__ 484 ATCATCTCAGAACTCGCCCAAACAAATGTAGGCTCTGTCTCAAAATGGAA 533
BSNT_03893___ 549 AGCGCTTGCTACAGTTGC---TACA--ACAGGTTCA-CGCCAATCTATCA 592
||||||.||.||.||.|| .||| |.|||.||| ||||..|..||||
RBAM_010640__ 534 AGCGCTCGCCACCGTCGCGGTCACATCAGAGGATCAGCGCCCTTACATCA 583
BSNT_03893___ 593 AATCAAATTTTTCAACATCTTTTACAAACATCACCATCGACAACAAAGCA 642
|||||||.||.||||||.|.|||||.||||||||.||.|||||.||||||
RBAM_010640__ 584 AATCAAACTTCTCAACAGCCTTTACGAACATCACGATTGACAATAAAGCA 633
BSNT_03893___ 643 ATAACACCTGTAATTGATACACAAGACTTCGCTAAAGTAACAGTCTCAGG 692
.|.||||||||.|||||||||||.||.||.||.|||.|.|||||.|||||
RBAM_010640__ 634 GTCACACCTGTGATTGATACACAGGATTTTGCCAAATTGACAGTGTCAGG 683
BSNT_03893___ 693 CAACAGTGTCAGTTTATCCGTTGTGAAAAATTAA 726
||.|||.|||||..|.||.||.||.||| |||
RBAM_010640__ 684 CAGCAGCGTCAGCATGTCTGTCGTCAAA---TAA 714
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