Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01685 and RBAM_010110

See DNA alignment / Visit BSNT_01685 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence pep-align/BSNT_01685___yhaS.1.9828.seq
#    -bsequence pep-align/RBAM_010110___yhaS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01685___yhaS-RBAM_010110___yhaS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01685___yhaS-RBAM_010110___yhaS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01685___yhaS
# 2: RBAM_010110___yhaS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 117
# Identity:      54/117 (46.2%)
# Similarity:    70/117 (59.8%)
# Gaps:          12/117 (10.3%)
# Score: 265.0
# 
#
#=======================================

BSNT_01685___      1 MDKLLISFLLGLFMVYFPPSDVVLPSQFEASTDSYVPMSSYPQETQSAKT     50
                     |..:::|.||..|||.||||||.||||....|||:|.:|.|||||.||||
RBAM_010110__      1 MKYVILSLLLSFFMVLFPPSDVALPSQLVTETDSHVQISVYPQETDSAKT     50

BSNT_01685___     51 PSPGSMHPAELIKEYSPLAQSVRQLSVKPLDEPLINRLEKALAVPVKYQS    100
                     |......|..|.|.|..|::.:..|||||||:.:.:.:|:..|:|::|||
RBAM_010110__     51 PVHTKTAPQGLSKGYGALSRMISLLSVKPLDQFIDSTMERTCAIPIQYQS    100

BSNT_01685___    101 NYLRI------------    105
                     ||||.            
RBAM_010110__    101 NYLRHQTISHCQSVFTV    117


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.