Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01685 and RBAM_010110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01685___yhaS.1.9828.seq
# -bsequence dna-align/RBAM_010110___yhaS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01685___yhaS-RBAM_010110___yhaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01685___yhaS-RBAM_010110___yhaS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01685___yhaS
# 2: RBAM_010110___yhaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 403
# Identity: 214/403 (53.1%)
# Similarity: 214/403 (53.1%)
# Gaps: 134/403 (33.3%)
# Score: 564.0
#
#
#=======================================
BSNT_01685___ 1 ATGGATAAAT-TGCTGA---TCAGTTTTCTGTT----AGGTTTATTTATG 42
||| |||| || ||| ||||.| |||| ||.||| ||||||
RBAM_010110__ 1 ATG---AAATATG-TGATACTCAGCT---TGTTACTGAGCTTT-TTTATG 42
BSNT_01685___ 43 GTGTACTTTCCCCCTTCGGACGTGGTTCTGCCTTCCCAGTT------TGA 86
|||...||.|||||||||||.||.|.|||.||||||||.|| .||
RBAM_010110__ 43 GTGCTGTTCCCCCCTTCGGATGTCGCTCTTCCTTCCCAATTGGTGACAGA 92
BSNT_01685___ 87 AGCTAGCACTGACAGCTATGTGCCTATGTCCTCATATCCGCAGGAAACAC 136
| ||.||||||.||||.|..||.||....||.|||||||||||..
RBAM_010110__ 93 A------ACAGACAGCCATGTACAAATTTCGGTTTACCCGCAGGAAACGG 136
BSNT_01685___ 137 AATCGGCAAAAACGCCATCGCCGGG--CAGCATGCACC----CGGCT--- 177
|.||||||||.||||| || || |||| |.|||
RBAM_010110__ 137 ATTCGGCAAAGACGCC-------GGTTCA-----CACCAAAACCGCTCCG 174
BSNT_01685___ 178 ---GAGCTGATCAAAGAG--TAC--------AGCCC------TCTGGCGC 208
|..||| ||||| || ||| |.||| |||
RBAM_010110__ 175 CAAGGCCTG-TCAAA-AGGATACGGTGCGTTATCCCGGATGATCT----- 217
BSNT_01685___ 209 AGTCTGTCAGGCAGCTCTCTGTCAAACCACTTGA-CGAACCGCTGAT--- 254
..|||| |.|||||||||||.||||| |.|..|..||||
RBAM_010110__ 218 -CCCTGT--------TATCTGTCAAACCTCTTGATCAATTCATTGATTCC 258
BSNT_01685___ 255 --AAACAGGCTGGAAAAGGCTTTGGCCGTCCCTGTCAAATACCAGTCTAA 302
|| ||||||.|.|.|..|||.|.||..|..||||||||||.||
RBAM_010110__ 259 ACAA------TGGAAAGGACATGCGCCATTCCGATACAATACCAGTCAAA 302
BSNT_01685___ 303 TTACCTCCGAATATAA---------------------------------- 318
||||||||| ..||.|
RBAM_010110__ 303 TTACCTCCG-GCATCAGACCATTTCTCATTGCCAATCTGTATTTACGGTG 351
BSNT_01685___ 318 --- 318
RBAM_010110__ 352 TAA 354
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