Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01681 and RBAM_010060

See DNA alignment / Visit BSNT_01681 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence pep-align/BSNT_01681___yhaX.1.9828.seq
#    -bsequence pep-align/RBAM_010060___yhaX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01681___yhaX
# 2: RBAM_010060___yhaX
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     251/288 (87.2%)
# Similarity:   272/288 (94.4%)
# Gaps:           0/288 ( 0.0%)
# Score: 1296.0
# 
#
#=======================================

BSNT_01681___      1 MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSA     50
                     ||||:|||||||||||||||:||.||||||||||||||||||||||||||
RBAM_010060__      1 MSKQMLALNIDGALLRSNGKLHQTTKDAIEYVKKKGIYVTLVTNRHFRSA     50

BSNT_01681___     51 QKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQ    100
                     ||:||.|||:|||||||||||:||||.|||||:||:|||||||||||||.
RBAM_010060__     51 QKVAKILKLNAKLITHSGAYISEKIDEPFFEKKISEDHTFNIVQVLESYP    100

BSNT_01681___    101 CNIRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMD    150
                     ||||||||||||||||||||||:||.:|||||||||||||||||||||:|
RBAM_010060__    101 CNIRLLHEKYSIGNKKKVNSNLVGKTMIHPSDPIFYPVQFVESLSDLLLD    150

BSNT_01681___    151 EPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSK    200
                     ||||||||||:.|..:|.|||:||.||||||||||||.||||||||||||
RBAM_010060__    151 EPVSAPVIEVHAEDGLQADITDTIMKAFPAVDVIRVNGEKLNIVPKGVSK    200

BSNT_01681___    201 EAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRK    250
                     |:||::||:||||||::|||||||.||||||||||||||||||..|:|||
RBAM_010060__    201 ESGLSMVAAELGLSMEEVVAIGHQEDDLPMIELAGLGVAMGNASNELKRK    250

BSNT_01681___    251 ADWVTRSNDEQGVAYMMKEYFRMQQRKGFLDKFHMKRV    288
                     ||||||||||||||||:|||||||.||||||||||||.
RBAM_010060__    251 ADWVTRSNDEQGVAYMIKEYFRMQHRKGFLDKFHMKRP    288


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.