Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01681 and RBAM_010060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01681___yhaX.1.9828.seq
# -bsequence dna-align/RBAM_010060___yhaX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01681___yhaX
# 2: RBAM_010060___yhaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity: 680/875 (77.7%)
# Similarity: 680/875 (77.7%)
# Gaps: 16/875 ( 1.8%)
# Score: 2619.0
#
#
#=======================================
BSNT_01681___ 1 GTGTCAAAACAATTGCTTGCCTTAAATATAGATGGAGCGCTGCTTCGGTC 50
||||||||||||.||||.||.|||||||||||.||||||||.|||||.||
RBAM_010060__ 1 GTGTCAAAACAAATGCTGGCGTTAAATATAGACGGAGCGCTTCTTCGCTC 50
BSNT_01681___ 51 GAACGGGAAGATTCATCAGGCAACGAAAGACGCGATTGAATATGTAAAGA 100
.|||||.||..||||||||.|.||.||.||.||.||.|||||.||.||||
RBAM_010060__ 51 CAACGGCAAACTTCATCAGACGACAAAGGATGCCATCGAATACGTCAAGA 100
BSNT_01681___ 101 AAAAAGGGATTTACGTCACACTTGTGACCAACCGTCATTTTCGCTCAGCA 150
|||||||.||||||||||||||.||.||.|||||.|||||||||||.||.
RBAM_010060__ 101 AAAAAGGAATTTACGTCACACTGGTCACAAACCGCCATTTTCGCTCCGCT 150
BSNT_01681___ 151 CAGAAAATAGCGAAATCGCTAAAGCTTGATGCCAAGCTGATCACCCATAG 200
||.|||.|.||||||....|||||||..||||.||..||||.|||||.||
RBAM_010060__ 151 CAAAAAGTGGCGAAAATATTAAAGCTGAATGCGAAATTGATTACCCACAG 200
BSNT_01681___ 201 CGGGGCATATATCGCTGAGAAAATTGACGCCCCGTTTTTTGAAAAAAGAA 250
|||.|||||.||..||||.|||||.||.|..||||||||||||||.|.||
RBAM_010060__ 201 CGGCGCATACATTTCTGAAAAAATAGATGAGCCGTTTTTTGAAAAGAAAA 250
BSNT_01681___ 251 TTTCTGATGATCATACCTTTAACATTGTTCAAGTGCTGGAGAGCTATCAA 300
|.||.||.|||||.||.|||||.||||||||.||||||||.|||||||.|
RBAM_010060__ 251 TATCAGAAGATCACACGTTTAATATTGTTCAGGTGCTGGAAAGCTATCCA 300
BSNT_01681___ 301 TGTAATATTCGGCTTCTTCACGAAAAGTATTCCATCGGAAACAAGAAAAA 350
||.|||||.|||||||||||||||||.|||||.||||||||||||||.||
RBAM_010060__ 301 TGCAATATCCGGCTTCTTCACGAAAAATATTCGATCGGAAACAAGAAGAA 350
BSNT_01681___ 351 GGTGAATTCGAATTTATTGGGGAAAGCACTCATTCATCCGTCTGACCCGA 400
.|||||.||.|||.|..|.||||||.|..|.|||||||||||||||||||
RBAM_010060__ 351 AGTGAACTCCAATCTGGTCGGGAAAACGATGATTCATCCGTCTGACCCGA 400
BSNT_01681___ 401 TCTTCTATCCAGTCCAGTTCGTTGAATCATTAAGCGATCTCCTCATGGAT 450
|.||.|||||.||.|||||.||.|||||||||||.||.||.|||.|.|||
RBAM_010060__ 401 TTTTTTATCCGGTGCAGTTTGTCGAATCATTAAGTGACCTGCTCCTTGAT 450
BSNT_01681___ 451 GAGCCGGTGAGTGCACCCGTCATCGAGGTGTACACGGAGCACGACATTCA 500
||||||||....||.||||||||.||.|||.|..|.||..|.|.|.|.||
RBAM_010060__ 451 GAGCCGGTTTCAGCGCCCGTCATTGAAGTGCATGCCGAAGATGGCCTGCA 500
BSNT_01681___ 501 GCATGACATTACAGAAACGATTACAAAAGCCTTCCCTGCAGTGGATGTGA 550
|..|||.||.||.||.|||||.|..|||||.|||||.||.||.|||||||
RBAM_010060__ 501 GGCTGATATAACGGATACGATAATGAAAGCATTCCCGGCCGTCGATGTGA 550
BSNT_01681___ 551 TTCGCGTAAACGATGAGAAGCTGAATATCGTCCCGAAAGGTGTCTC-GAA 599
|.|||||.||||..||.||.|||||.|||||.||.|||||.||.|| .||
RBAM_010060__ 551 TCCGCGTCAACGGAGAAAAACTGAACATCGTGCCTAAAGGGGTTTCAAAA 600
BSNT_01681___ 600 GGAAGCGGGTT-----TGGCCCTCGTCGCTTCAGAGCTGGGCCTGAGTAT 644
|.||||||..| ||| |||.|||| ||.||.||.||....||
RBAM_010060__ 601 GAAAGCGGACTTTCGATGG---TCGCCGCT---GAACTCGGGCTTTCAAT 644
BSNT_01681___ 645 GGATGATGTCGTGGCCATTGGGCATCAGTATGACGATCTGCCGATGATCG 694
|||.||.||.||.||.||.||.||||||.|.||.||||||||||||||||
RBAM_010060__ 645 GGAAGAGGTTGTAGCTATCGGCCATCAGGAAGATGATCTGCCGATGATCG 694
BSNT_01681___ 695 AACTTGCCGGTCTTGGGGTAGCGATGGGGAATGCCGTTC--CGGAAATTA 742
|.||.||||||||.||.||.||||||||||||||| || ..|||.|.|
RBAM_010060__ 695 AGCTGGCCGGTCTCGGCGTCGCGATGGGGAATGCC--TCAAATGAATTAA 742
BSNT_01681___ 743 AGAGAAAGGCAGATTGGGTTACAAGGTCCAATGACGAGCAAGGTGTCGCT 792
|.|||||.||.||.|||||.||||||||.|||||.||.|||||.|||||.
RBAM_010060__ 743 AAAGAAAAGCGGACTGGGTGACAAGGTCAAATGATGAACAAGGAGTCGCC 792
BSNT_01681___ 793 TATATGATGAAGGAATATTTCCGAATGCAGCAGCGAAAAGGATTTCTTGA 842
||||||||.||||||||||||||.||||||||.||.|||||.|||||.||
RBAM_010060__ 793 TATATGATTAAGGAATATTTCCGCATGCAGCACCGCAAAGGCTTTCTCGA 842
BSNT_01681___ 843 TAAGTTCCACATGAAACGTGTGTAA 867
|||||||||.||||||||...||||
RBAM_010060__ 843 TAAGTTCCATATGAAACGGCCGTAA 867
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