Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01644 and RBAM_009800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence pep-align/BSNT_01644.1.9828.seq
# -bsequence pep-align/RBAM_009800___yhdR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01644-RBAM_009800___yhdR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01644-RBAM_009800___yhdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01644
# 2: RBAM_009800___yhdR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity: 196/394 (49.7%)
# Similarity: 224/394 (56.9%)
# Gaps: 150/394 (38.1%)
# Score: 1042.0
#
#
#=======================================
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 1 MTVAGLSREVTQNLEKGSWIRKLFDEGARLKKEFGADKVFDFSIGNPVAE 50
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 51 PPETFKKALCEAAETGRHGYIQNQGLPEAREKVARFLSERFQTEISPRHT 100
BSNT_01644 1 -------------------------------------------------M 1
:
RBAM_009800__ 101 VMTVGAGGALNVALKSILNPEEEVILLSPYFAEYKAYVENYRGRPVICPL 150
BSNT_01644 2 TSRFEIDIEAVRQSITPQTKGLILNTPHNPTGTVLSQKNIDDLGALLKEI 51
|..||||||||:.:|||:|||||:|||||||||||||||:::|||||||.
RBAM_009800__ 151 TDSFEIDIEAVKGAITPRTKGLIVNTPHNPTGTVLSQKNLNELGALLKEA 200
BSNT_01644 52 EEKSGQTIYVLFDEPYSQLIYDEELANPFQSYHRVILASSFSKDLGIAGE 101
||::||:|::|||||||||||.||.|||||:||||||.||||||||||||
RBAM_009800__ 201 EERNGQSIFILFDEPYSQLIYGEEQANPFQAYHRVILVSSFSKDLGIAGE 250
BSNT_01644 102 RLGYIGLDSRMPDADLLINAFVYCNRTLGFVNAPVMMQRAVARMDDLRVD 151
|||||..|::||:.|||.:|||:||||||||||||||||||||||||.:|
RBAM_009800__ 251 RLGYIAADAQMPEGDLLTDAFVFCNRTLGFVNAPVMMQRAVARMDDLSID 300
BSNT_01644 152 ASAYKERRDLMVDILKEAGFEFEMPKGGFFVFPKSPIEDEVAFCVHAAQK 201
|..|::|||||||||.||||||||||||||||||||||||||||:|||||
RBAM_009800__ 301 AEPYRKRRDLMVDILTEAGFEFEMPKGGFFVFPKSPIEDEVAFCMHAAQK 350
BSNT_01644 202 YKLLIVPSSGFGMSGHFRLSFSVPIEQIKNSRDIFISLYKDFA- 244
|||||||.||||.||:||||||||.|||:.|||||.:||:||:
RBAM_009800__ 351 YKLLIVPGSGFGKSGYFRLSFSVPSEQIRQSRDIFKALYQDFSS 394
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