Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01644 and RBAM_009800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01644.1.9828.seq
# -bsequence dna-align/RBAM_009800___yhdR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01644-RBAM_009800___yhdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01644-RBAM_009800___yhdR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01644
# 2: RBAM_009800___yhdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1198
# Identity: 571/1198 (47.7%)
# Similarity: 571/1198 (47.7%)
# Gaps: 476/1198 (39.7%)
# Score: 2068.5
#
#
#=======================================
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 1 ATGACAGTGGCCGGTTTATCACGGGAAGTGACACAGAATCTGGAGAAAGG 50
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 51 TTCATGGATACGCAAACTATTTGATGAAGGCGCTCGGCTGAAAAAAGAGT 100
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 101 TCGGCGCCGATAAGGTGTTTGACTTTTCAATAGGAAATCCGGTTGCGGAG 150
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 151 CCGCCTGAAACATTTAAAAAGGCGCTTTGCGAAGCGGCTGAAACAGGGCG 200
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 201 GCACGGATACATACAAAACCAGGGGCTTCCGGAGGCGAGAGAAAAGGTTG 250
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 251 CGCGCTTTTTGTCAGAGCGGTTTCAGACAGAAATTTCCCCCAGGCATACA 300
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 301 GTCATGACGGTCGGAGCCGGCGGGGCGCTGAATGTCGCGCTGAAAAGCAT 350
BSNT_01644 0 -------------------------------------------------- 0
RBAM_009800__ 351 TTTAAACCCCGAGGAAGAAGTCATCCTTCTTTCGCCTTATTTTGCGGAAT 400
BSNT_01644 1 ------------TTGACAA-----------------------GCCGG--- 12
||||.|| |||.|
RBAM_009800__ 401 ATAAAGCGTATGTTGAAAATTACCGCGGCAGACCCGTCATCTGCCCGCTG 450
BSNT_01644 13 ---------TTTGAGATCGACATTGAAGCGGT--AAGGCAAT-CGATCAC 50
||||||||.||.||||||||||| |||| | |||||||
RBAM_009800__ 451 ACTGATTCATTTGAGATTGATATTGAAGCGGTTAAAGG---TGCGATCAC 497
BSNT_01644 51 TCCACAGACGAAAGGGCTGATTCTCAATACACCGCATAACCCCACAGGCA 100
.||.|..||||||||.|||||..|.|||||.||||||||.||.||.||.|
RBAM_009800__ 498 CCCCCGTACGAAAGGACTGATCGTTAATACGCCGCATAATCCGACGGGGA 547
BSNT_01644 101 CTGTTCTCAGCCAGAAAAATATAGACGATTTAGGCGCTTTATTAAAAGAA 150
||||.||||||||||||||..|..||||.||.|||||.||||||||||||
RBAM_009800__ 548 CTGTGCTCAGCCAGAAAAACCTTAACGAATTGGGCGCCTTATTAAAAGAA 597
BSNT_01644 151 ATAGAAGAGAAGAGCGGCCAGACG---ATTTATGTGCTGTTTGATGAACC 197
...||||||..||.|||||| |.| ||||||.| |.|||||||||||
RBAM_009800__ 598 GCCGAAGAGCGGAACGGCCA-AAGCATATTTATTT--TATTTGATGAACC 644
BSNT_01644 198 GTACAGTCAATTAATCTATGATGAAGAGCTGGCAAATCCGTTTCAATCGT 247
||||||.||..|.|||||.|..|||||||.|||.|||||||||||..|||
RBAM_009800__ 645 GTACAGCCAGCTGATCTACGGAGAAGAGCAGGCGAATCCGTTTCAGGCGT 694
BSNT_01644 248 ACCATCGTGTGATATTGGCCAGCTCATTCAGTAAAGATCTCGGCATAGCC 297
|.||.||.|||||.||.|.|||.||.||||||||||||||||||||.||.
RBAM_009800__ 695 ATCACCGCGTGATTTTAGTCAGTTCGTTCAGTAAAGATCTCGGCATTGCG 744
BSNT_01644 298 GGAGAGCGGCTCGGGTATATCGGATTGGACAG----CCGAATGCCGGATG 343
||.||..||||||||||||||| .|.||| ||.||||||.||.|
RBAM_009800__ 745 GGGGAAAGGCTCGGGTATATCG----CGGCAGACGCCCAAATGCCTGAGG 790
BSNT_01644 344 CGGACCTTTTGATCAACGCTTTTGTGTATTGTAATCGAACGCTTGGATTT 393
..||.|||.|||...|.||.||.||.|..||.||.||.|||||.||.|||
RBAM_009800__ 791 GCGATCTTCTGACGGATGCGTTCGTTTTCTGCAACCGGACGCTCGGCTTT 840
BSNT_01644 394 GTGAATGCCCCTGTCATGATGCAGCGGGCTGTGGCACGAATGGATGAT-T 442
|||||.||.||.||||||||||||||.||.|||||..||||||||||| |
RBAM_009800__ 841 GTGAACGCTCCGGTCATGATGCAGCGTGCCGTGGCGAGAATGGATGATCT 890
BSNT_01644 443 TAAGAGTAGACGC-GAGCGCTTATAAAGAGCGCCGGGATTTAATGGTAGA 491
|..|| |.||||| ||.| ||||.|.|.||||..|.||..|.|||||.||
RBAM_009800__ 891 TTCGA-TTGACGCTGAAC-CTTACAGAAAGCGGAGAGACCTTATGGTGGA 938
BSNT_01644 492 CATTTTAAAAGAAGCCGGTTTTGAATTTGAAATGCCAAAGGGAGGTTTCT 541
|||..|.|.||||||||||||.||||||||||||||.||.|||||.||.|
RBAM_009800__ 939 CATCCTCACAGAAGCCGGTTTCGAATTTGAAATGCCGAAAGGAGGCTTTT 988
BSNT_01644 542 TTGTTTTTCCGAAATCGCCGATTGAAGATGAAGTTGCATTTTGCGTGCAT 591
|.||.|||||||||||.|||||||||||.||.||.|||||.|||.|||||
RBAM_009800__ 989 TCGTCTTTCCGAAATCACCGATTGAAGACGAGGTGGCATTCTGCATGCAT 1038
BSNT_01644 592 GCCGCCCAAAAATACAAATTATTAATTGTGCCGAGCAGCGGTTTTGGAAT 641
|||||.||.|||||||||.||||.||.||.||..|||||||.|||||||.
RBAM_009800__ 1039 GCCGCACAGAAATACAAACTATTGATCGTACCCGGCAGCGGATTTGGAAA 1088
BSNT_01644 642 GAGCGGGCATTTCCGATTATCCTTCAGTGTGCCGATC-GAGCAGATTAAA 690
.|||||..|||||||||||||.|||||.||||| .|| ||.|||||.|.|
RBAM_009800__ 1089 AAGCGGCTATTTCCGATTATCTTTCAGCGTGCC-TTCAGAACAGATCAGA 1137
BSNT_01644 691 AACTCACGGGACATTTTCATTTCTTTATATAAAGATTTTGCTTAA--- 735
.|.|||||.||.|||||||...|..|.|||.||||||||.|||.|
RBAM_009800__ 1138 CAGTCACGCGATATTTTCAAAGCACTGTATCAAGATTTTTCTTCATAG 1185
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