Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01644 and RBAM_009800

See Amino acid alignment / Visit BSNT_01644 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01644.1.9828.seq
#    -bsequence dna-align/RBAM_009800___yhdR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01644-RBAM_009800___yhdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01644-RBAM_009800___yhdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01644
# 2: RBAM_009800___yhdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1198
# Identity:     571/1198 (47.7%)
# Similarity:   571/1198 (47.7%)
# Gaps:         476/1198 (39.7%)
# Score: 2068.5
# 
#
#=======================================

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__      1 ATGACAGTGGCCGGTTTATCACGGGAAGTGACACAGAATCTGGAGAAAGG     50

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__     51 TTCATGGATACGCAAACTATTTGATGAAGGCGCTCGGCTGAAAAAAGAGT    100

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    101 TCGGCGCCGATAAGGTGTTTGACTTTTCAATAGGAAATCCGGTTGCGGAG    150

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    151 CCGCCTGAAACATTTAAAAAGGCGCTTTGCGAAGCGGCTGAAACAGGGCG    200

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    201 GCACGGATACATACAAAACCAGGGGCTTCCGGAGGCGAGAGAAAAGGTTG    250

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    251 CGCGCTTTTTGTCAGAGCGGTTTCAGACAGAAATTTCCCCCAGGCATACA    300

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    301 GTCATGACGGTCGGAGCCGGCGGGGCGCTGAATGTCGCGCTGAAAAGCAT    350

BSNT_01644         0 --------------------------------------------------      0
                                                                       
RBAM_009800__    351 TTTAAACCCCGAGGAAGAAGTCATCCTTCTTTCGCCTTATTTTGCGGAAT    400

BSNT_01644         1 ------------TTGACAA-----------------------GCCGG---     12
                                 ||||.||                       |||.|   
RBAM_009800__    401 ATAAAGCGTATGTTGAAAATTACCGCGGCAGACCCGTCATCTGCCCGCTG    450

BSNT_01644        13 ---------TTTGAGATCGACATTGAAGCGGT--AAGGCAAT-CGATCAC     50
                              ||||||||.||.|||||||||||  ||||   | |||||||
RBAM_009800__    451 ACTGATTCATTTGAGATTGATATTGAAGCGGTTAAAGG---TGCGATCAC    497

BSNT_01644        51 TCCACAGACGAAAGGGCTGATTCTCAATACACCGCATAACCCCACAGGCA    100
                     .||.|..||||||||.|||||..|.|||||.||||||||.||.||.||.|
RBAM_009800__    498 CCCCCGTACGAAAGGACTGATCGTTAATACGCCGCATAATCCGACGGGGA    547

BSNT_01644       101 CTGTTCTCAGCCAGAAAAATATAGACGATTTAGGCGCTTTATTAAAAGAA    150
                     ||||.||||||||||||||..|..||||.||.|||||.||||||||||||
RBAM_009800__    548 CTGTGCTCAGCCAGAAAAACCTTAACGAATTGGGCGCCTTATTAAAAGAA    597

BSNT_01644       151 ATAGAAGAGAAGAGCGGCCAGACG---ATTTATGTGCTGTTTGATGAACC    197
                     ...||||||..||.|||||| |.|   ||||||.|  |.|||||||||||
RBAM_009800__    598 GCCGAAGAGCGGAACGGCCA-AAGCATATTTATTT--TATTTGATGAACC    644

BSNT_01644       198 GTACAGTCAATTAATCTATGATGAAGAGCTGGCAAATCCGTTTCAATCGT    247
                     ||||||.||..|.|||||.|..|||||||.|||.|||||||||||..|||
RBAM_009800__    645 GTACAGCCAGCTGATCTACGGAGAAGAGCAGGCGAATCCGTTTCAGGCGT    694

BSNT_01644       248 ACCATCGTGTGATATTGGCCAGCTCATTCAGTAAAGATCTCGGCATAGCC    297
                     |.||.||.|||||.||.|.|||.||.||||||||||||||||||||.||.
RBAM_009800__    695 ATCACCGCGTGATTTTAGTCAGTTCGTTCAGTAAAGATCTCGGCATTGCG    744

BSNT_01644       298 GGAGAGCGGCTCGGGTATATCGGATTGGACAG----CCGAATGCCGGATG    343
                     ||.||..|||||||||||||||    .|.|||    ||.||||||.||.|
RBAM_009800__    745 GGGGAAAGGCTCGGGTATATCG----CGGCAGACGCCCAAATGCCTGAGG    790

BSNT_01644       344 CGGACCTTTTGATCAACGCTTTTGTGTATTGTAATCGAACGCTTGGATTT    393
                     ..||.|||.|||...|.||.||.||.|..||.||.||.|||||.||.|||
RBAM_009800__    791 GCGATCTTCTGACGGATGCGTTCGTTTTCTGCAACCGGACGCTCGGCTTT    840

BSNT_01644       394 GTGAATGCCCCTGTCATGATGCAGCGGGCTGTGGCACGAATGGATGAT-T    442
                     |||||.||.||.||||||||||||||.||.|||||..||||||||||| |
RBAM_009800__    841 GTGAACGCTCCGGTCATGATGCAGCGTGCCGTGGCGAGAATGGATGATCT    890

BSNT_01644       443 TAAGAGTAGACGC-GAGCGCTTATAAAGAGCGCCGGGATTTAATGGTAGA    491
                     |..|| |.||||| ||.| ||||.|.|.||||..|.||..|.|||||.||
RBAM_009800__    891 TTCGA-TTGACGCTGAAC-CTTACAGAAAGCGGAGAGACCTTATGGTGGA    938

BSNT_01644       492 CATTTTAAAAGAAGCCGGTTTTGAATTTGAAATGCCAAAGGGAGGTTTCT    541
                     |||..|.|.||||||||||||.||||||||||||||.||.|||||.||.|
RBAM_009800__    939 CATCCTCACAGAAGCCGGTTTCGAATTTGAAATGCCGAAAGGAGGCTTTT    988

BSNT_01644       542 TTGTTTTTCCGAAATCGCCGATTGAAGATGAAGTTGCATTTTGCGTGCAT    591
                     |.||.|||||||||||.|||||||||||.||.||.|||||.|||.|||||
RBAM_009800__    989 TCGTCTTTCCGAAATCACCGATTGAAGACGAGGTGGCATTCTGCATGCAT   1038

BSNT_01644       592 GCCGCCCAAAAATACAAATTATTAATTGTGCCGAGCAGCGGTTTTGGAAT    641
                     |||||.||.|||||||||.||||.||.||.||..|||||||.|||||||.
RBAM_009800__   1039 GCCGCACAGAAATACAAACTATTGATCGTACCCGGCAGCGGATTTGGAAA   1088

BSNT_01644       642 GAGCGGGCATTTCCGATTATCCTTCAGTGTGCCGATC-GAGCAGATTAAA    690
                     .|||||..|||||||||||||.|||||.||||| .|| ||.|||||.|.|
RBAM_009800__   1089 AAGCGGCTATTTCCGATTATCTTTCAGCGTGCC-TTCAGAACAGATCAGA   1137

BSNT_01644       691 AACTCACGGGACATTTTCATTTCTTTATATAAAGATTTTGCTTAA---    735
                     .|.|||||.||.|||||||...|..|.|||.||||||||.|||.|   
RBAM_009800__   1138 CAGTCACGCGATATTTTCAAAGCACTGTATCAAGATTTTTCTTCATAG   1185


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