Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01624 and RBAM_009690

See DNA alignment / Visit BSNT_01624 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence pep-align/BSNT_01624___citR.1.9828.seq
#    -bsequence pep-align/RBAM_009690___citR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01624___citR-RBAM_009690___citR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01624___citR-RBAM_009690___citR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01624___citR
# 2: RBAM_009690___citR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 291
# Identity:     232/291 (79.7%)
# Similarity:   253/291 (86.9%)
# Gaps:           0/291 ( 0.0%)
# Score: 1188.0
# 
#
#=======================================

BSNT_01624___      1 MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKQLEKEISCKLFER     50
                     |||||||||||||||||||||||||||||||||||||.||||||||||:|
RBAM_009690__      1 MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKLLEKEISCKLFQR     50

BSNT_01624___     51 KGRQIQLTDEGRAYLPYALRLLDDYENSMAELHRVRQGYSQTLQLAVSPL    100
                     .||:||||:||:||:|:|:|||:|||||||||||||||||.||.||||||
RBAM_009690__     51 SGRKIQLTEEGKAYVPFAMRLLEDYENSMAELHRVRQGYSHTLTLAVSPL    100

BSNT_01624___    101 IADTVLPSVMKRYTAMNTETEMAVTIFESAEIASLIKAGEADIGLSCLKV    150
                     ||||||||||||||..|.||||.||||||.||||.|:.|.||||||||||
RBAM_009690__    101 IADTVLPSVMKRYTEDNKETEMTVTIFESEEIASQIRNGSADIGLSCLKV    150

BSNT_01624___    151 QSSSLSCHCLYKDPVVLVAPPDKRFIEDNEIDAKEVLEQYLLLTHNHPDY    200
                     |||||:|..||.|||||||||.::.......:.|::..||||||||||||
RBAM_009690__    151 QSSSLTCRPLYNDPVVLVAPPGRKPGTGKADEVKDLFGQYLLLTHNHPDY    200

BSNT_01624___    201 WDDLLRQVRMTFPFVRTMKVTQTHITKRFIKEGLGVSFLPLSTVKRELAE    250
                     |||||||||:.|||||||||||||||||||||||||||||||.|:.|||.
RBAM_009690__    201 WDDLLRQVRIQFPFVRTMKVTQTHITKRFIKEGLGVSFLPLSAVRAELAA    250

BSNT_01624___    251 KQMIRIPYQSVQLPYAGAYAIALYENKKEKKFLDFLSHFHF    291
                     ..||.||.:..|:|.|||||||||||:|:|.||||||||||
RBAM_009690__    251 GSMIEIPCEFAQMPSAGAYAIALYENEKKKTFLDFLSHFHF    291


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.