Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01624 and RBAM_009690

See Amino acid alignment / Visit BSNT_01624 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01624___citR.1.9828.seq
#    -bsequence dna-align/RBAM_009690___citR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01624___citR-RBAM_009690___citR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01624___citR-RBAM_009690___citR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01624___citR
# 2: RBAM_009690___citR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 905
# Identity:     672/905 (74.3%)
# Similarity:   672/905 (74.3%)
# Gaps:          58/905 ( 6.4%)
# Score: 2460.0
# 
#
#=======================================

BSNT_01624___      1 ATGGATTTCAAATGGCTTCACACCTTTGTGACCGCTGCAAAATATGAGAA     50
                     ||||||||.|||||||||||||||||.||.|||||.||||||||||||||
RBAM_009690__      1 ATGGATTTTAAATGGCTTCACACCTTCGTCACCGCGGCAAAATATGAGAA     50

BSNT_01624___     51 CTTCCGAAAAACGGCGGAAACGCTTTTCTTATCTCAGCCTACTGTGACCG    100
                     .|||.||||||||||||||||||||||.|||||||||||.||.||.||||
RBAM_009690__     51 TTTCAGAAAAACGGCGGAAACGCTTTTTTTATCTCAGCCGACCGTCACCG    100

BSNT_01624___    101 TACATATCAAGCAATTAGAAAAAGAAATCAGCTGCAAGCTGTTCGAACGT    150
                     |.|||||.||...||||||.|||||||||||||||||||||||..|.||.
RBAM_009690__    101 TTCATATAAAATTATTAGAGAAAGAAATCAGCTGCAAGCTGTTTCAGCGA    150

BSNT_01624___    151 AAAGGCAGGCAAATCCAGCTGACTGATGAAGGCAGGGCGTATTTGCCGTA    200
                     |..|||.||.||||.||..||||.||.|||||.|..||.||..||||||.
RBAM_009690__    151 AGCGGCCGGAAAATACAATTGACGGAAGAAGGAAAAGCATACGTGCCGTT    200

BSNT_01624___    201 TGCGCTCAGGCTTCTTGATGATTATGAAAACAGCATGGCAGAGCTTCACA    250
                     |||..|.||||||.|.||.||.|||||||||||||||||.||.||.||||
RBAM_009690__    201 TGCCATGAGGCTTTTGGAAGACTATGAAAACAGCATGGCGGAACTGCACA    250

BSNT_01624___    251 GAGTGAGACAAGGCTACTCTCAAAC-CTTACAGCTCGCGGTTTCTCCGCT    299
                     |.|||.|.||.||||||||.||.|| ||.||| |||||.|||||.|||||
RBAM_009690__    251 GGGTGCGCCAGGGCTACTCGCACACGCTGACA-CTCGCTGTTTCGCCGCT    299

BSNT_01624___    300 TATTGCAGATACTGTGCTTCCTTCTGTCATGAAACGGTACACAG----CA    345
                     |||.||.||.||.||.||.||.|||||||||||.||.||.||||    ||
RBAM_009690__    300 TATCGCCGACACCGTTCTCCCGTCTGTCATGAAGCGTTATACAGAGGACA    349

BSNT_01624___    346 ATGAATACGGAAACAGAAATGGCGGTTACGATTTTCGAATCAGCGGAAAT    395
                     ||.||    |||||.||||||.||||.||.|||||||||||.|..|||||
RBAM_009690__    350 ATAAA----GAAACCGAAATGACGGTCACCATTTTCGAATCGGAAGAAAT    395

BSNT_01624___    396 CGCGTCACTGATTAAAGCCGGGGAAGCAGATATCGGACTAAGCTGTTTAA    445
                     |||.||.|..||.|.|..|||...|||.|||||||||||.|||||.||||
RBAM_009690__    396 CGCCTCTCAAATCAGAAACGGCTCAGCCGATATCGGACTGAGCTGCTTAA    445

BSNT_01624___    446 AGGTACAATCTTCTTCTTTAAGCTGCCACTGCTTATACAAAGACCCTGTC    495
                     ||||.|||||.|||||..|.|..||||.|..|.|.|||||.|||||.||.
RBAM_009690__    446 AGGTGCAATCATCTTCCCTCACTTGCCGCCCCCTGTACAATGACCCCGTT    495

BSNT_01624___    496 GTCCTTGTTGCCCCGCCCGATAAGCGTTTCATAGAAGAC----AAC---G    538
                     |||||.||.||.|||||||    ||       .|||.||    |||   |
RBAM_009690__    496 GTCCTCGTCGCGCCGCCCG----GC-------CGAAAACCCGGAACAGGG    534

BSNT_01624___    539 AA-----ATTGATGCCAAAGAGGTGCTCGAACAATACCTGCTTTTGACCC    583
                     ||     | |||.|..|||||..||.|||.||||||.|||||||||||||
RBAM_009690__    535 AAGGCGGA-TGAAGTGAAAGACCTGTTCGGACAATATCTGCTTTTGACCC    583

BSNT_01624___    584 ACAATCATCCTGATTACTGGGACGACTTGCTCCGTCAAGTCAGAATGACA    633
                     |.||.||||||||.||.|||||.||.||||||||.||.|||||||| |||
RBAM_009690__    584 ATAACCATCCTGACTATTGGGATGATTTGCTCCGCCAGGTCAGAAT-ACA    632

BSNT_01624___    634 TTTCCATTT-GTGAGAACAATGAAGGTCACTCAAACACATATAACGAAAC    682
                     .||||.||| ||.||.|||||||||||.||.||.||.|||||.|||||||
RBAM_009690__    633 GTTCCCTTTCGTCAGGACAATGAAGGTGACACAGACGCATATTACGAAAC    682

BSNT_01624___    683 GGTTTATCAAGGAAGGACTCGGAGTTTCATTTCTGCCTTTATCTACAGTA    732
                     |.|||||.||.||.||.||.||.||.|||||||||||..|.||..|||||
RBAM_009690__    683 GATTTATTAAAGAGGGGCTGGGTGTCTCATTTCTGCCGCTGTCAGCAGTA    732

BSNT_01624___    733 AAGCGTGAGTTAGCAGAGAAACAG-----ATGATCAGAATTCCTT----A    773
                     ..|...||..|.||.|     |||     |||||...||||||.|    |
RBAM_009690__    733 CGGGCCGAACTCGCCG-----CAGGCAGCATGATTGAAATTCCGTGCGAA    777

BSNT_01624___    774 TCAGTCTGTACAGCTGCCCTATGCAGGCGCTTACGCGATTGCCCTTTATG    823
                     |..|.|    |||.||||....||.|||||.|||||.||.|||||.||||
RBAM_009690__    778 TTCGCC----CAGATGCCGAGCGCGGGCGCGTACGCCATCGCCCTCTATG    823

BSNT_01624___    824 AAAATAAGAAAGAAAAAAAA--TTCTTGGATTTTTTATCACATTTTCATT    871
                     |||||  ||||.|||.||||  ||.||.||||||||||||||||||||||
RBAM_009690__    824 AAAAT--GAAAAAAAGAAAACCTTTTTAGATTTTTTATCACATTTTCATT    871

BSNT_01624___    872 TTTAG    876
                     |||||
RBAM_009690__    872 TTTAG    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01624 and RBAM_009690

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
