Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01590 and RBAM_009490

See DNA alignment / Visit BSNT_01590 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence pep-align/BSNT_01590___yhcV.1.9828.seq
#    -bsequence pep-align/RBAM_009490___yhcV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01590___yhcV-RBAM_009490___yhcV.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01590___yhcV-RBAM_009490___yhcV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01590___yhcV
# 2: RBAM_009490___yhcV
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 140
# Identity:     115/140 (82.1%)
# Similarity:   126/140 (90.0%)
# Gaps:           0/140 ( 0.0%)
# Score: 566.0
# 
#
#=======================================

BSNT_01590___      1 MSSVKDTMTTQVATVSPNQTIQEAASLMKQHNVGAIPVVEQGVLKGMLTD     50
                     |||:|.:|||.||||||||||||||:||.||||||||||:.|.|||||||
RBAM_009490__      1 MSSIKQSMTTHVATVSPNQTIQEAAALMHQHNVGAIPVVDGGELKGMLTD     50

BSNT_01590___     51 RDITLRTTAQGRDGQTPVSEVMSTELVSGNPNMSLEDASQLMAQHQIRRL    100
                     |||.|||||||||||||||.|||:.:|||||.||||:||.||||||||||
RBAM_009490__     51 RDIALRTTAQGRDGQTPVSHVMSSAVVSGNPEMSLEEASHLMAQHQIRRL    100

BSNT_01590___    101 PIVDQNNLVGIVALGDLAVNQMSNESAGSALTNISHQNIH    140
                     ||||||:||||||||||||:|.||||||:||:|||.||..
RBAM_009490__    101 PIVDQNHLVGIVALGDLAVDQRSNESAGAALSNISSQNTQ    140


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.