Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01590 and RBAM_009490

See Amino acid alignment / Visit BSNT_01590 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01590___yhcV.1.9828.seq
#    -bsequence dna-align/RBAM_009490___yhcV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01590___yhcV-RBAM_009490___yhcV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01590___yhcV-RBAM_009490___yhcV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01590___yhcV
# 2: RBAM_009490___yhcV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity:     339/424 (80.0%)
# Similarity:   339/424 (80.0%)
# Gaps:           2/424 ( 0.5%)
# Score: 1343.0
# 
#
#=======================================

BSNT_01590___      1 ATGAGTTCAGTTAAAGATACAATGACAACGCAGGTGGCAACCGTTTCTCC     50
                     |||||||||.|.|||.|..|||||||.||.||.|||||.|||||||||||
RBAM_009490__      1 ATGAGTTCAATCAAACAATCAATGACTACCCACGTGGCTACCGTTTCTCC     50

BSNT_01590___     51 GAATCAAACGATTCAGGAAGCGGCTTCTCTAATGAAACAGCATAACGTCG    100
                     .||||||||||||||||||||||||.|.||.|||.|.||||||||.||||
RBAM_009490__     51 CAATCAAACGATTCAGGAAGCGGCTGCGCTGATGCACCAGCATAATGTCG    100

BSNT_01590___    101 GGGCGATCCCCGTTGTAGAGCAAGGTGTTTTAAAAGGAATGCTGACTGAC    150
                     |.||.||.|||||.||.||...|||.|..|||||||||||||||||.|||
RBAM_009490__    101 GAGCAATTCCCGTCGTTGACGGAGGGGAATTAAAAGGAATGCTGACAGAC    150

BSNT_01590___    151 CGTGACATTACATTAAGAACTACAGCTCAGGGCCGTGATGGCCAGACACC    200
                     |||||.||..||||.|||||.||.|||||.|||||.||.|||||.|||||
RBAM_009490__    151 CGTGATATCGCATTGAGAACAACGGCTCAAGGCCGCGACGGCCAAACACC    200

BSNT_01590___    201 CGTTTCAGAAGTGATGTCAACAGAACTCGTATCAGGAAACCCTAATATGA    250
                     .||||||.|.||||||||..|.|.|.|.||.||.||||||||..|.||||
RBAM_009490__    201 TGTTTCACACGTGATGTCTTCTGCAGTTGTGTCCGGAAACCCGGAAATGA    250

BSNT_01590___    251 GTCTGGAAGACGCGTCGCAGCTGATGGCCCAGCACCAAATCCGCCGCCTT    300
                     ||||.|||||.|||||.||.|||||||||||.||||||||||||||||||
RBAM_009490__    251 GTCTTGAAGAGGCGTCACATCTGATGGCCCAACACCAAATCCGCCGCCTT    300

BSNT_01590___    301 CCTATTGTAGATCAAAACAATCTAGTCGGGATCGTTGCGCTTGGAGACCT    350
                     ||.|||||.||||||||..||||.||||||||||||||||||||||||.|
RBAM_009490__    301 CCCATTGTCGATCAAAATCATCTGGTCGGGATCGTTGCGCTTGGAGACTT    350

BSNT_01590___    351 GGCAGTCAATCAGATGTCGAACGAGTCTGCGGGATCAGCGCTGACAAACA    400
                     .||.||..|||||...||.||.||||||||||||.|.||.||..|.||.|
RBAM_009490__    351 AGCGGTTGATCAGCGTTCAAATGAGTCTGCGGGAGCGGCTCTTTCCAATA    400

BSNT_01590___    401 TTTCTCA-CCAAAACATTCATTAA    423
                     |||| || .|||||||..||.|||
RBAM_009490__    401 TTTC-CAGTCAAAACACACAGTAA    423


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