Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01589 and RBAM_009480

See DNA alignment / Visit BSNT_01589 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence pep-align/BSNT_01589___yhcU.1.9828.seq
#    -bsequence pep-align/RBAM_009480___yhcU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01589___yhcU-RBAM_009480___yhcU.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01589___yhcU-RBAM_009480___yhcU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01589___yhcU
# 2: RBAM_009480___yhcU
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 131
# Identity:      85/131 (64.9%)
# Similarity:   102/131 (77.9%)
# Gaps:           0/131 ( 0.0%)
# Score: 429.0
# 
#
#=======================================

BSNT_01589___      1 MARKVIDVRIVNAATAEQESFIKELSMELIHDVFPLYFSELDIQRFKKKG     50
                     |||||||||||||||..|||.|:|||.||..:|||||||||:||||||:|
RBAM_009480__      1 MARKVIDVRIVNAATDGQESAIQELSSELFQNVFPLYFSELEIQRFKKRG     50

BSNT_01589___     51 VLSLNNHYYQGTLKEAFQIMACLQMIHIILTKPSPHSDLSDQAIFEKNSK    100
                     ||||.|..||||||||||||||||.:||:|:||.|..|:.::|:|:||..
RBAM_009480__     51 VLSLQNQRYQGTLKEAFQIMACLQTVHIMLSKPHPVYDVKERALFDKNCA    100

BSNT_01589___    101 MLNDFGIYFPFAFSDFQKKTNKAFFGQRRLI    131
                     :||:.|:.|||.:.||:........|.||||
RBAM_009480__    101 LLNECGMNFPFTYDDFETGAGSEACGHRRLI    131


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.