Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01589 and RBAM_009480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01589___yhcU.1.9828.seq
# -bsequence dna-align/RBAM_009480___yhcU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01589___yhcU-RBAM_009480___yhcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01589___yhcU-RBAM_009480___yhcU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01589___yhcU
# 2: RBAM_009480___yhcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity: 305/413 (73.8%)
# Similarity: 305/413 (73.8%)
# Gaps: 34/413 ( 8.2%)
# Score: 1088.5
#
#
#=======================================
BSNT_01589___ 1 ATGGCAAGAAAGGTGATTGACGTGAGAATTGTGAACGCAGCAACTGCAGA 50
||||||||||||||||||||.||||||||||||||||||||.||||..|.
RBAM_009480__ 1 ATGGCAAGAAAGGTGATTGATGTGAGAATTGTGAACGCAGCGACTGACGG 50
BSNT_01589___ 51 ACAGGAGAGCTTTAT-CAAGGAGCTGT-CTATGGAGCTGATCCATGATGT 98
|||.||.|||...|| ||| |||||.| ||.| ||..||.|.||..||||
RBAM_009480__ 51 ACAAGAAAGCGCGATACAA-GAGCTTTCCTCT-GAATTGTTTCAAAATGT 98
BSNT_01589___ 99 ATTTCCTCTTTATTTCTCCGAACTGGACATTCAGCGCTTTAAAAAGAAAG 148
.||||||||||||||||||||||||||.|||||||||||||||||.|..|
RBAM_009480__ 99 CTTTCCTCTTTATTTCTCCGAACTGGAAATTCAGCGCTTTAAAAAAAGGG 148
BSNT_01589___ 149 GCGTTCTGTCTTTAAATAACCATTATTACCAAGGAACATTAAAAGAAGCA 198
||||..|.||.|||.|.|||||...||||||||||||.|||||||||||.
RBAM_009480__ 149 GCGTATTATCATTACAAAACCAACGTTACCAAGGAACTTTAAAAGAAGCG 198
BSNT_01589___ 199 TTTCAAATTATGGCTTGTCTGCAAATGATACATATTATCCTGACCAAGCC 248
|||||||||||||||||||||||||.|.|||||||.||.|||.|.||
RBAM_009480__ 199 TTTCAAATTATGGCTTGTCTGCAAACGGTACATATCATGCTGTCAAA--- 245
BSNT_01589___ 249 TTCGCCGCACTCTG-ATTTGA-GT----GATCAGGCGATTTTTGAAAAAA 292
|||||||.|.| ||.||| || ||.|.||||.|.|||||.||||
RBAM_009480__ 246 ---GCCGCACCCGGTATATGACGTCAAAGAGCGGGCGCTGTTTGATAAAA 292
BSNT_01589___ 293 ACAGCAAGATGCTGAATGATTTTGGGATTTATTTTCCGTTTGCTTTTTCT 342
|..||....|||||||.||.|..||.||..|||||||.|||.|.|.|..|
RBAM_009480__ 293 ATTGCGCTTTGCTGAACGAATGCGGAATGAATTTTCCCTTTACCTATGAT 342
BSNT_01589___ 343 GACTTTCAAAAGAAGAC--------TAACA-AAGCCTTTTTCGGTCAAAG 383
|| |||| .|||| .|.|| ||||| |.||||||.||
RBAM_009480__ 343 GA-TTTC-----GAGACAGGGGCCGGATCAGAAGCC---TGCGGTCACAG 383
BSNT_01589___ 384 AAGGCTGATATAA 396
|||||||||.|.|
RBAM_009480__ 384 AAGGCTGATCTGA 396
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