Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01586 and RBAM_009460

See DNA alignment / Visit BSNT_01586 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence pep-align/BSNT_01586___yhcS.1.9828.seq
#    -bsequence pep-align/RBAM_009460___yhcS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01586___yhcS-RBAM_009460___yhcS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01586___yhcS-RBAM_009460___yhcS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01586___yhcS
# 2: RBAM_009460___yhcS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 203
# Identity:     135/203 (66.5%)
# Similarity:   164/203 (80.8%)
# Gaps:          10/203 ( 4.9%)
# Score: 698.0
# 
#
#=======================================

BSNT_01586___      1 MKKV--IPLFIIAAGLVIAGYGGFKLIDTNMKTEQTLKEAKLAAEKPQEP     48
                     |.|:  |||.:|..|::|..||.:|:||::|||..:|:|||    |..||
RBAM_009460__      1 MNKLKHIPLLVIIVGIIITCYGSWKIIDSHMKTNHSLEEAK----KATEP     46

BSNT_01586___     49 LGTKNSTDQA---KNKASFKPETGQASGILEIPKINAELPIVEGTDANDL     95
                     :..||.|..|   :.|..|.||||:||||||||:|:|||||||||||:||
RBAM_009460__     47 VLEKNETKSAVLTQRKKEFHPETGEASGILEIPEIDAELPIVEGTDADDL     96

BSNT_01586___     96 EKGVGHYKDSYYPDENGQIVLSGHRDTVFRRTGELEKGDRLRILLSYGEF    145
                     .||||||||||||.::|||||||||||||||||||:|||||.::||||.|
RBAM_009460__     97 AKGVGHYKDSYYPGDHGQIVLSGHRDTVFRRTGELKKGDRLNVILSYGTF    146

BSNT_01586___    146 TYEIVKTKIVDKDDTSIITLQHEKEELILTTCYPFSYVGNAPKRYIIYGK    195
                     :|:|.:||||.:||||:|||||::|||||||||||||:||||||||||..
RBAM_009460__    147 SYKISRTKIVSRDDTSVITLQHKREELILTTCYPFSYIGNAPKRYIIYAD    196

BSNT_01586___    196 RVT    198
                     .| 
RBAM_009460__    197 PV-    198


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