Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01586 and RBAM_009460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01586___yhcS.1.9828.seq
# -bsequence dna-align/RBAM_009460___yhcS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01586___yhcS-RBAM_009460___yhcS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01586___yhcS-RBAM_009460___yhcS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01586___yhcS
# 2: RBAM_009460___yhcS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 641
# Identity: 423/641 (66.0%)
# Similarity: 423/641 (66.0%)
# Gaps: 88/641 (13.7%)
# Score: 1361.0
#
#
#=======================================
BSNT_01586___ 1 GTGAAAAAAGT------TATTCCACTAT----TCATCATTGCTGCCGGCC 40
.||||.|||.| ||||||.|| | ||||||| .|.|||..
RBAM_009460__ 1 ATGAACAAACTGAAACATATTCCGCT-TCTCGTCATCAT---CGTCGGTA 46
BSNT_01586___ 41 TAGTGATCGCAGGCTATGGAGGCTTTAAATTGATCGATACGAATATGAAA 90
|..|.|||.||.|.||.|||.|||..||..|.||.|||.|..||||||||
RBAM_009460__ 47 TCATCATCACATGTTACGGAAGCTGGAAGATCATTGATTCACATATGAAA 96
BSNT_01586___ 91 ACGGAACAGACACTAAAAGAAGCAAAACTTGCGGCTGAAAAGCCGCAGGA 140
|||.|.||..|.||..|||||||||| ||||||..|| ||
RBAM_009460__ 97 ACGAACCATTCGCTTGAAGAAGCAAA-----------AAAAGCAACA-GA 134
BSNT_01586___ 141 ACCT---TTGG----GGACGAA--AAATAGC---------ACAGATCAAG 172
|||| |||| |.||||| |||.||| |||.|.| |
RBAM_009460__ 135 ACCTGTCTTGGAAAAGAACGAAACAAAAAGCGCTGTGCTGACACAGC--G 182
BSNT_01586___ 173 CAAAGAACAAAGCATCATTTAAGCCTGAGACCGGACAAGCGAGCGGCATT 222
||||.||.| ||||.|.||.||.||.||..|.||.|||||||||
RBAM_009460__ 183 CAAAAAAGA-------ATTTCACCCCGAAACGGGTGAGGCAAGCGGCATT 225
BSNT_01586___ 223 TTAGAAATACCGAAAATCAATGCAGAGCTTCCGATCGTGGAGGGCACCGA 272
||||||||.||..|||||.|.||.|||||.|||||||||||.||.||.||
RBAM_009460__ 226 TTAGAAATCCCTGAAATCGACGCTGAGCTCCCGATCGTGGAAGGGACTGA 275
BSNT_01586___ 273 TGCTAATGATTTAGAAAAAGGTGTCGGGCATTACAAGGACAGCTATTATC 322
.||..|||||||||.||||||.|||||.|||||.||||||||||||||||
RBAM_009460__ 276 CGCAGATGATTTAGCAAAAGGCGTCGGACATTATAAGGACAGCTATTATC 325
BSNT_01586___ 323 CTGATGAAAACGGACAAATTGTGCTGTCAGGGCATCGGGATACCGTGTTT 372
|.|..||..||||.|||||||||.|.||.||.||..||||.||.|||||.
RBAM_009460__ 326 CGGGCGATCACGGCCAAATTGTGTTATCCGGCCACAGGGACACGGTGTTC 375
BSNT_01586___ 373 CGCCGGACGGGAGAGCTGGAAAAGGGGGATCGGCTCCGCATTCTCCTGTC 422
||||||||.||.||..||.||||.||.||..|.||...|.|..|..||||
RBAM_009460__ 376 CGCCGGACCGGCGAATTGAAAAAAGGAGACAGACTGAACGTGATTTTGTC 425
BSNT_01586___ 423 ATATGGAGAATTCACATATGAAATTGTAAAA--------ACAAAAATTGT 464
.||.|| |||.|.| ..||.||||| ||||||||.||
RBAM_009460__ 426 TTACGG------CACGTTT--TCTTATAAAATCAGCCGTACAAAAATCGT 467
BSNT_01586___ 465 CGATAA----GGATGACACATCTATTATCACGCTCCAGCATGAAAAGGAA 510
| | ||||||.||||||.|.|||||.||.|||||..|...|||.
RBAM_009460__ 468 C----AGCCGGGATGATACATCTGTCATCACCCTTCAGCACAAGCGGGAG 513
BSNT_01586___ 511 GAGCTGATTCTGACGACCTGCTATCCGTTTTCATACGTCGGAAATGCCCC 560
||.|||||.|||||.||.|||||.||||||||.|||.|.||||||||.||
RBAM_009460__ 514 GAACTGATCCTGACCACTTGCTACCCGTTTTCTTACATTGGAAATGCGCC 563
BSNT_01586___ 561 GAAGCGCTATATTATATATGGAAAACGA----GTGACTTAA 597
|||.||.||||||||||||| .||| || ||||
RBAM_009460__ 564 GAAACGATATATTATATATG----CCGACCCGGT---TTAA 597
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