Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01585 and RBAM_009450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence pep-align/BSNT_01585___yhcR.1.9828.seq
# -bsequence pep-align/RBAM_009450___yhcR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01585___yhcR-RBAM_009450___yhcR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01585___yhcR-RBAM_009450___yhcR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01585___yhcR
# 2: RBAM_009450___yhcR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 428/1221 (35.1%)
# Similarity: 495/1221 (40.5%)
# Gaps: 637/1221 (52.2%)
# Score: 2133.5
#
#
#=======================================
BSNT_01585___ 1 MMRRILHIVLITALMFLNVMYTFEAVKAAEPQQPISIEKAIQQKEGQALV 50
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 51 EGYAVGQAVSPQHYKLTSPFSNDYNVALADRKNETSPDHILPVQIPSAFR 100
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 101 SQFGLQTNPLLLGKKITVQGKLDNYFNTTGLKNVQSMNVTDDTKTPPAEQ 150
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 151 QVTINEARGRLNEEVTIKGIITADQNAIGGGKLSTFLQDETGGINIYSPS 200
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 201 PEQFPELKEGMDVTVTGKITSYQGLKEIVPSSSGIKINQSNQSLPAPKHL 250
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 251 TINELINGSLGDQYEGRLVKLTAFVSSIPSSPAGGGYNVTMIDDDHHAMT 300
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 301 LRVMNETGVIDELDEGKWYDFTGVLSRYQTFQLLPRKSADLKLLEEQPAP 350
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 351 PSAEGEYEGIVDRVVDGDTIHLKSPVLGTTKIRFVNVDTPETYHTPKNDA 400
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 401 DENQLRFGKKASDYLKTVLSPGDKITVKVGSEAKDSYGRLLGQVLTESGS 450
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 451 NVNLELVKNGYAPTYFIWPVDNEEDYQQFQAAVAAAKKDQKGIWNENDPL 500
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 501 MEMPFEFRAREQGKGLTRYVGDSSNKTYVQPADWKK----------IAVE 540
.|| :.|.
RBAM_009450__ 1 ---------------------------------MKKKRGMRLTCCLLTVC 17
BSNT_01585___ 541 NRIFFASASEAESAG-------------YKKTQTAPQEHVPLRILSMNDL 577
..:| |..:||:.| ||:.||.....|||||:|||||
RBAM_009450__ 18 FMMF--SVKDAEAIGQAGSLNEAGMDKAYKERQTEDSGRVPLRIISMNDL 65
BSNT_01585___ 578 HGKIDQQYELDLDGNGIADGTFGRMDYAAAYLKEKKAEKKNSLIVHAGDM 627
||||||||||||:|:|..|||||||||||||:|:.||||:::.:||||||
RBAM_009450__ 66 HGKIDQQYELDLNGDGKPDGTFGRMDYAAAYIKKAKAEKEHAFVVHAGDM 115
BSNT_01585___ 628 IGGSSPVSSLLQDEPTVELMEDIGFDVGTVGNHEFDEGTDELLRILNGGD 677
||||||||:|.||||||||||||||||||||||||||||:||.||:||||
RBAM_009450__ 116 IGGSSPVSALFQDEPTVELMEDIGFDVGTVGNHEFDEGTNELKRIINGGD 165
BSNT_01585___ 678 HP--KGTNGYDGQNFPLVCANCKMKSTGEPFLPAYDIINVEGVPVAFIGV 725
|| |||:|||||||||||||||:|| ||.|||.|:|..|.|:|||||||
RBAM_009450__ 166 HPDGKGTSGYDGQNFPLVCANCKLKS-GESFLPPYEIKYVSGIPVAFIGV 214
BSNT_01585___ 726 VTQSAAGMVMPEGIKNIEFTDEVTAVNEAANELKKKGVKAIAVLAHMSAE 775
||:||||||:|:|||:|.|||||.|||:||.:|||||:||||||||||||
RBAM_009450__ 215 VTRSAAGMVIPDGIKDITFTDEVKAVNDAAADLKKKGIKAIAVLAHMSAE 264
BSNT_01585___ 776 QNTNAITGESADLANKTDSEIDVIFAAHNHQVVNGEVNGKLIVQAFEYGK 825
||.:|||||||.||:.||||||||||||||:|||||::||||||||||||
RBAM_009450__ 265 QNGSAITGESAKLASGTDSEIDVIFAAHNHKVVNGEIDGKLIVQAFEYGK 314
BSNT_01585___ 826 AIGVVDVEIDKTTKDIVKKSAEIVYVDQSKIEPDVSASAILKKYETIAEP 875
|||:.|:|:||.:||||||||||.|:|||||:||.:|:.||.|||...:|
RBAM_009450__ 315 AIGIADLELDKESKDIVKKSAEIQYIDQSKIKPDPAAAGILSKYEEKVKP 364
BSNT_01585___ 876 IISEVVGEAAVDMEGGYSNDGDTPLGNLIADGMRAAMKTDFALMNGGGIR 925
||||.|||||.|::|||||||||.|||||||||:|.||:|||||||||||
RBAM_009450__ 365 IISEAVGEAAHDIKGGYSNDGDTALGNLIADGMKAKMKSDFALMNGGGIR 414
BSNT_01585___ 926 EALKKGPITWGDLYNIQPFGNVLTKLEIKGKDLREIINAQISPVFGPDYS 975
:.||||||||||||||||||||||||||||||||||||||||||:|||||
RBAM_009450__ 415 DGLKKGPITWGDLYNIQPFGNVLTKLEIKGKDLREIINAQISPVYGPDYS 464
BSNT_01585___ 976 ISGFTYTWDKETGKAVDLKMADGTEIQPDATYTLTVNNFMATATGAKYQP 1025
||||:|||:.|||:|||:||||||:|||:..||:|||.|||||.||||.|
RBAM_009450__ 465 ISGFSYTWNPETGQAVDMKMADGTDIQPEKGYTVTVNQFMATAAGAKYGP 514
BSNT_01585___ 1026 IGLLGKNPVTGPEDLEATVEYVKSFDEPIAYTKEGRIKLAEASDIEDPVT 1075
||.||||.|||||||||||:|||||..||:|..:|||:.|.|:: |
RBAM_009450__ 515 IGKLGKNRVTGPEDLEATVDYVKSFSAPISYQTDGRIRTASAAE-----T 559
BSNT_01585___ 1076 EDPITEKPGDDPVTEDPIKEDPRPGEDLPDIKETPGTAPVHQLPPSAISR 1125
.|....:||.... ||...||..|.| |....|.:|
RBAM_009450__ 560 PDDTGNQPGSGET----------PGGTRPDKGEKP------QAEKPAKNR 593
BSNT_01585___ 1126 FNEIPINNTKTADTANSISTLPLQTETAESGSDHQLPDTSAGYYNFMVIG 1175
..:|.:...|..:..:
RBAM_009450__ 594 MRQISLIKPKKLNVLS---------------------------------- 609
BSNT_01585___ 1176 AAVTLSGTYLYVRRKRSASRT 1196
RBAM_009450__ 609 --------------------- 609
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