Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01585 and RBAM_009450
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01585___yhcR.1.9828.seq
# -bsequence dna-align/RBAM_009450___yhcR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01585___yhcR-RBAM_009450___yhcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01585___yhcR-RBAM_009450___yhcR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01585___yhcR
# 2: RBAM_009450___yhcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3667
# Identity: 1397/3667 (38.1%)
# Similarity: 1397/3667 (38.1%)
# Gaps: 1913/3667 (52.2%)
# Score: 4488.5
#
#
#=======================================
BSNT_01585___ 1 ATGATGAGGCGTATTCTGCATATTGTGTTGATCACAGCATTAATGTTCTT 50
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 51 AAATGTAATGTACACGTTCGAAGCTGTAAAGGCAGCTGAACCGCAACAGC 100
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 101 CTATATCGATTGAGAAGGCAATACAGCAAAAAGAAGGACAGGCGCTTGTC 150
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 151 GAAGGATATGCAGTCGGCCAGGCTGTTTCCCCGCAGCATTATAAGCTGAC 200
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 201 AAGCCCTTTTTCAAATGATTATAATGTCGCGCTGGCAGACCGTAAAAACG 250
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 251 AGACATCGCCTGATCACATCCTTCCTGTGCAAATCCCCTCCGCCTTCAGA 300
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 301 AGCCAATTTGGGCTGCAAACCAATCCGCTTCTTCTTGGGAAAAAGATAAC 350
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 351 GGTTCAAGGAAAACTTGATAATTACTTTAACACGACAGGACTTAAAAACG 400
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 401 TTCAGTCGATGAACGTAACCGATGACACGAAAACTCCGCCGGCTGAACAG 450
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 451 CAAGTGACCATAAATGAAGCACGGGGAAGGCTGAATGAAGAAGTAACGAT 500
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 501 AAAAGGGATCATTACAGCTGATCAAAACGCAATCGGAGGCGGGAAGCTGT 550
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 551 CGACCTTTTTGCAAGATGAAACCGGAGGCATTAACATTTATTCGCCATCC 600
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 601 CCTGAACAATTTCCCGAATTAAAAGAGGGTATGGATGTCACGGTGACAGG 650
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 651 GAAAATCACGTCTTACCAGGGGCTGAAAGAAATCGTTCCAAGCTCATCAG 700
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 701 GCATCAAAATCAACCAGTCAAACCAATCCCTCCCCGCCCCCAAACACTTA 750
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 751 ACAATCAATGAACTTATTAACGGCAGCCTAGGTGATCAGTATGAAGGACG 800
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 801 CCTTGTGAAACTAACCGCTTTTGTTTCCTCAATTCCAAGTTCTCCTGCCG 850
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 851 GCGGCGGTTACAATGTAACAATGATTGATGACGACCATCATGCAATGACG 900
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 901 CTCCGGGTTATGAATGAAACAGGGGTGATAGACGAGCTTGATGAGGGCAA 950
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 951 ATGGTATGACTTTACCGGTGTGTTAAGCAGATACCAAACCTTTCAGCTGC 1000
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1001 TTCCGCGAAAATCGGCTGACCTGAAGCTGCTTGAAGAGCAGCCCGCACCT 1050
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1051 CCGTCTGCGGAGGGAGAATATGAAGGGATTGTTGACCGAGTAGTTGACGG 1100
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1101 CGATACCATTCATCTTAAATCTCCGGTGCTTGGAACGACAAAAATCCGGT 1150
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1151 TTGTAAATGTAGATACACCCGAAACATATCACACACCAAAAAATGACGCA 1200
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1201 GATGAAAATCAATTAAGATTTGGCAAAAAAGCATCTGACTATCTAAAAAC 1250
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1251 GGTTCTGTCCCCGGGTGATAAAATTACTGTCAAGGTCGGGAGTGAAGCCA 1300
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1301 AGGACAGTTATGGCAGATTGCTCGGACAAGTCTTAACCGAATCAGGTTCA 1350
RBAM_009450__ 0 -------------------------------------------------- 0
BSNT_01585___ 1351 AACGTGAACTTAGAGCTTGTAAAAAACGGCTATGC-TCCGACGTATTTTA 1399
.|||| |.||||||.||.||||| ||..||| |..|.
RBAM_009450__ 1 ---ATGAA----------GAAAAAAAGGGGTATGCGTCTTACG--TGCTG 35
BSNT_01585___ 1400 TTTG--GCCGGTTGACAATGAAGAGGATTATCAGCAAT-TTCAGGCCGCA 1446
|||| |.||||| .|..|||| .|| |||||
RBAM_009450__ 36 TTTGCTGACGGTT----------TGTTTTAT----GATGTTCAG------ 65
BSNT_01585___ 1447 GTAGCCGCTGCAAAAAAAGATCAAAAAGGAATTTGGAATGAAAACGATCC 1496
|| ||||| |||.|
RBAM_009450__ 66 -----CG-------------------------------TGAAA--GATGC 77
BSNT_01585___ 1497 CCTCATGGAAATGCCGTTTGAATTCAGAGCCAGAGAGCAAGGGAAAGGCT 1546
||| |||||
RBAM_009450__ 78 ------GGA--------------------------AGCAA---------- 85
BSNT_01585___ 1547 TGACAAGATATGTAGGGGATTCGTCGAATAAAACATATGTGCAGCCAGCT 1596
|||.|.|| |||| |.|
RBAM_009450__ 86 -----------------------TCGGACAA---------GCAG---GAT 100
BSNT_01585___ 1597 GACTGGAAGAAGATAGCTGTGGAAAACAGAATTTTCTTCGCCTCAGCAAG 1646
.||||.|.|| ||||| ||||
RBAM_009450__ 101 CACTGAATGA----AGCTG---------GAAT------------------ 119
BSNT_01585___ 1647 TGAAGCGGAGAGCGCGGGATATAAAAAAACGCAAACGGCA-CCTCAAGA- 1694
|||.|..||| |||||| .||||||| .||.||||
RBAM_009450__ 120 ------GGATAAAGCG---TATAAA-------GAACGGCAGACTGAAGAC 153
BSNT_01585___ 1695 -----ACATGTGCCGCTTAGAATTCTCAGCATGAATGATTTGCATGGCAA 1739
.|.|||.|||||.|||||..||||||||||||||.||||.||.||
RBAM_009450__ 154 TCCGGCCGTGTCCCGCTCAGAATCATCAGCATGAATGATCTGCACGGAAA 203
BSNT_01585___ 1740 AATCGATCAGCAATATGAGCTTGATCTTGATGGAAATGGAATTGCAGACG 1789
|||.||||||||||||||||||||.|||.|.|||.|.||.|...|.||.|
RBAM_009450__ 204 AATTGATCAGCAATATGAGCTTGACCTTAACGGAGACGGTAAACCGGATG 253
BSNT_01585___ 1790 GCACGTTTGGACGCATGGATTATGCCGC--CGCATATTTAAAAGAAAAAA 1837
|||||||.||.||.|||||.||.||||| ||.|.||| ||||
RBAM_009450__ 254 GCACGTTCGGGCGGATGGACTACGCCGCAGCGTACATT--------AAAA 295
BSNT_01585___ 1838 AGGCTGAAA----AGAAA-AACTCGC---TGATTGTGCACGCGGGAGATA 1879
|||| |||| ||||| |||.||| || |.|||||.|||||.||||
RBAM_009450__ 296 AGGC-GAAAGCCGAGAAAGAACACGCCTTTG-TCGTGCATGCGGGCGATA 343
BSNT_01585___ 1880 TGATCGGCGGAAGCTCTCCAGTTTCCTCTCTTCTTCAGGATGAACCGACT 1929
|||||||.||.||||||||.||.||..|.|||.||||||||||||||||.
RBAM_009450__ 344 TGATCGGGGGCAGCTCTCCCGTGTCAGCCCTTTTTCAGGATGAACCGACA 393
BSNT_01585___ 1930 GTAGAACTGATGGAGGACATCGGATTTGATGTCGGAACCGTGGGAAACCA 1979
||||||.|||||||.||||||||.||||||||||||||.||.||.||.||
RBAM_009450__ 394 GTAGAATTGATGGAAGACATCGGTTTTGATGTCGGAACTGTCGGCAATCA 443
BSNT_01585___ 1980 CGAATTTGATGAAGGCACGGATGAACTTCTGAGGATCTTAAATGGCGGTG 2029
||||||.||||||||.|||.||||.|||....|||||.|.|||||.||.|
RBAM_009450__ 444 CGAATTCGATGAAGGAACGAATGAGCTTAAACGGATCATCAATGGAGGAG 493
BSNT_01585___ 2030 ATCATCCG------AAAGGCACAAACGGATATGATGGACAGAACTTTCCC 2073
|||||||| ||.||.||||.|||.|||||.||.|| ||.||||||
RBAM_009450__ 494 ATCATCCGGACGGTAAGGGGACAAGCGGTTATGACGGCCA-AAATTTCCC 542
BSNT_01585___ 2074 -CTTGTATGTGCCAATTGTAAAATGAAATCAACTGGAGAGCCCTTTTTGC 2122
||.||.||.|||||.||||||.||||.||| ||.|||.|||||.|||
RBAM_009450__ 543 GCTCGTCTGCGCCAACTGTAAACTGAAGTCA---GGGGAGTCCTTTCTGC 589
BSNT_01585___ 2123 CGGCTTATGACATCATAAAT--GT----GGAGGGCGTACCCGTTGCTTTT 2166
||.|.|||||.|| ||||| || ||| .|.||.||.||.|||
RBAM_009450__ 590 CGCCGTATGAAAT--TAAATACGTTTCCGGA----ATTCCGGTCGCATTT 633
BSNT_01585___ 2167 ATCGGAGTTGTCACACAG-TCGGCAGCTGGCATGGTTATGCCTGAAGGGA 2215
|||||.|||||.|| ||| |||||.||.||||||||.||.||.||.||.|
RBAM_009450__ 634 ATCGGGGTTGTAAC-CAGATCGGCGGCAGGCATGGTCATCCCGGACGGAA 682
BSNT_01585___ 2216 -TAAAGAATATCGAGTTTACAGATGAAGTGACAGCGGTGAATGAGGCGGC 2264
||||| ||||...||||||.|||||.||.|..||.||.|||||.||.||
RBAM_009450__ 683 TTAAAG-ATATTACGTTTACGGATGAGGTAAAGGCCGTCAATGACGCCGC 731
BSNT_01585___ 2265 CAATGAGCTCAAGAAAAAAGGCGTGAAGGCCATCGCGGTTCTCGCACATA 2314
|..|||.||.|||||||||||..|.||.||.|||||.||.|||||.||||
RBAM_009450__ 732 CGCTGACCTGAAGAAAAAAGGAATTAAAGCAATCGCCGTGCTCGCCCATA 781
BSNT_01585___ 2315 TGTCAGCTGAACAAAA-----CACCAACGCCATTACCGGTGAGTCTGCTG 2359
||||.||||||||||| || ||.||.||.||.||.||.||..
RBAM_009450__ 782 TGTCTGCTGAACAAAATGGCTCA-----GCAATCACGGGAGAATCCGCAA 826
BSNT_01585___ 2360 ATCTTGCAAACAAAACAGATTCTGAAATTGACGTGATTTTTGCCGCGCAT 2409
|.|||||||.|..||||||.||.||.|||||.||||||||.||||||||.
RBAM_009450__ 827 AGCTTGCAAGCGGAACAGACTCAGAGATTGATGTGATTTTCGCCGCGCAC 876
BSNT_01585___ 2410 AATCATCAGGTTGTTAACGGTGAAGTGAATGGAAAACTGATTGTTCAAGC 2459
||||||.|.||.||.|||||.|||.|..|.||.||.|||||.||.||.||
RBAM_009450__ 877 AATCATAAAGTCGTAAACGGAGAAATCGACGGCAAGCTGATCGTGCAGGC 926
BSNT_01585___ 2460 GTTTGAATATGGAAAAGCGATAGGTGTCGTTGATGTAGAGATCGATAAAA 2509
.||||||||.||||||||.||.|||.|||..|||.|.||..|.||||||.
RBAM_009450__ 927 ATTTGAATACGGAAAAGCAATCGGTATCGCCGATCTTGAACTTGATAAAG 976
BSNT_01585___ 2510 CGACAAAAGACATTGTCAAAAAGTCCGCGGAAATCGTATATGTTGATCAA 2559
.|.|.||.||.||.||.|||||.||.|||||||||..||||.|.||||||
RBAM_009450__ 977 AGTCGAAGGATATCGTGAAAAAATCAGCGGAAATCCAATATATCGATCAA 1026
BSNT_01585___ 2560 AGTAAAATC------GAACCGGATGTCAGCGCGTCAGCCATTTTAAAGAA 2603
||||||||| ||.||||.| |||.|||.|||.||||..||
RBAM_009450__ 1027 AGTAAAATCAAGCCTGACCCGGCT------GCGGCAGGCATATTAAGCAA 1070
BSNT_01585___ 2604 ATACGAA-ACAATTGCGGAACCGATTATCAGCGAGGTAGTCGGCGAAGCC 2652
|||.||| |.|| .|.|.||||||||||||||||.|..|||||.|||||.
RBAM_009450__ 1071 ATATGAAGAGAA-AGTGAAACCGATTATCAGCGAAGCGGTCGGGGAAGCG 1119
BSNT_01585___ 2653 GCTGTTGATATGGAAGGG-GGGTATTCAAATGATGGCGATACGCCTCTTG 2701
||...|||||| .||||| ||||||||||||||.|||||.|||.||||.|
RBAM_009450__ 1120 GCCCATGATAT-AAAGGGCGGGTATTCAAATGACGGCGACACGGCTCTCG 1168
BSNT_01585___ 2702 GAAACCTGATTGCGGATGGTATGAGAGCTGCCATGAAAACGGATTTTGCC 2751
||||.||||||||.||.|||||||.|||....||||||.|.||||||||.
RBAM_009450__ 1169 GAAATCTGATTGCCGACGGTATGAAAGCGAAGATGAAATCCGATTTTGCA 1218
BSNT_01585___ 2752 CTTATGAATGGCGGCGGCATCCGTGAAGCGCT--GAAGAAGGGCCCGATT 2799
|||||||||||.||.||||||||.||.| ||| .||.||||| |||||.
RBAM_009450__ 1219 CTTATGAATGGGGGAGGCATCCGGGACG-GCTTAAAAAAAGGG-CCGATC 1266
BSNT_01585___ 2800 ACGTGGGGAGATCTTTACAATATTCAGCCGTTTGGAAATGTGTTAACGAA 2849
||.||||||||.|||||.|||||.||||||||.||.||||||.|.|||||
RBAM_009450__ 1267 ACATGGGGAGACCTTTATAATATACAGCCGTTCGGCAATGTGCTGACGAA 1316
BSNT_01585___ 2850 GCTTGAGATTAAAGGAAAAGATTTAAGAGAGATTATCAATGCTCAAATCT 2899
||||||.||.||||||||||||||..|.|||||.||.||.||.|||||.|
RBAM_009450__ 1317 GCTTGAAATCAAAGGAAAAGATTTGCGGGAGATCATTAACGCGCAAATTT 1366
BSNT_01585___ 2900 CGCCTGTTTTTGGGCCTGACTACAGCATCAGCGGGTTTACGTATACGTGG 2949
|.||.||.|..||.||.||.||||||||||||||.|||.|.|||||.|||
RBAM_009450__ 1367 CTCCGGTGTACGGACCGGATTACAGCATCAGCGGATTTTCCTATACATGG 1416
BSNT_01585___ 2950 GATAAA----GAAACCGGAAAAGCAGTTGATTTGAAAATGGCAGATGGCA 2995
|| |||||||||.||||.||||||.||||||||||.||.||.|
RBAM_009450__ 1417 ----AACCCGGAAACCGGACAAGCGGTTGATATGAAAATGGCGGACGGGA 1462
BSNT_01585___ 2996 CCGAGATCCAGCCCGATGCCA----CATATACATTGACCGTCAA-CAACT 3040
|.||.||.|||||||| | .|||||||.|.||.||.|| ||| |
RBAM_009450__ 1463 CAGACATACAGCCCGA----AAAAGGATATACAGTAACAGTTAATCAA-T 1507
BSNT_01585___ 3041 TTATGGCGACGGCGACAGGAGCCAAATATCAG-CCAATCGGACTGCTGGG 3089
||||||||||||||.|.||.||.||||| |.| ||.|||||....||.||
RBAM_009450__ 1508 TTATGGCGACGGCGGCGGGGGCAAAATA-CGGTCCGATCGGGAAACTCGG 1556
BSNT_01585___ 3090 AAAAAATCCGGTGACAGGGCCTGAGGATTTGGAAGCCACAGTTGAGTACG 3139
.||.||||.||||||.||||||||||||||||||||.|||||.||.||.|
RBAM_009450__ 1557 CAAGAATCGGGTGACGGGGCCTGAGGATTTGGAAGCGACAGTAGACTATG 1606
BSNT_01585___ 3140 TGAAAAGTTTTGATGAGCCAATTGCGTATACAAA-AGAGGGAAGAATTAA 3188
|.|||||.|||...|.|||.|||.|.||| |||| .||.||..|.||
RBAM_009450__ 1607 TCAAAAGCTTTTCCGCGCCGATTTCTTAT-CAAACCGACGGCCGCAT--- 1652
BSNT_01585___ 3189 GCTTGCTGAA--GCCAGTGATATTGAAGACCCTGTAACAGAAGACCCGAT 3236
|.|.| || || .||.|.|.|.||| |||.|||
RBAM_009450__ 1653 -----CCGCACGGC-------AT--CAGCCGCCGAAAC-----ACCTGAT 1683
BSNT_01585___ 3237 TACGGAAAAGCCCGGAGATGATCCGGTGACGGAGGATCCGATTAAAGAGG 3286
.|| .||||..||.|.|||| .|||.||
RBAM_009450__ 1684 GAC-------ACCGGCAATCAGCCGG-----------------GAAGCGG 1709
BSNT_01585___ 3287 ATCCAAGGCCAGGTGAAGATTTGCCTGATATAAAAGAAACTCCGGGAACA 3336
.|||||.||||| |.
RBAM_009450__ 1710 ----------------------------------GGAAACACCGGG--CG 1723
BSNT_01585___ 3337 GCACCGGTTCATCAGCTGCCGCCTTCAGCCATTTCGAGATTCAA---TGA 3383
|||||.| |||| ||| || .||
RBAM_009450__ 1724 GCACCAG-------------GCCT-------------GAT--AAAGGAGA 1745
BSNT_01585___ 3384 AATAC--CAATC--AACAACAC---AAAAACCGCTGATACTGCTAATAGC 3426
||.|| |||.| ||.|||.| |||||||| |||.|.|| ||
RBAM_009450__ 1746 AAAACCTCAAGCGGAAAAACCCGCTAAAAACCG--GATGCGGC----AG- 1788
BSNT_01585___ 3427 ATCAGCACATTGCCGTTACAAACCGAGACTGCAGAAAGCGGGTCTGATCA 3476
|||||| |.|.| ||||||.| |.||| ||.|.|.
RBAM_009450__ 1789 ATCAGC------CTGAT-CAAACCAA------AAAAA------CTAAACG 1819
BSNT_01585___ 3477 TCAGCTTCCGGATACGTC--AGCGGGCTACTATAACTTTATGGTAATCGG 3524
|| || ||| ||
RBAM_009450__ 1820 TC--CT---------GTCGTAG---------------------------- 1830
BSNT_01585___ 3525 TGCGGCGGTGACATTGTCAGGAACTTATCTATATGTCAGAAGAAAAAGGA 3574
RBAM_009450__ 1830 -------------------------------------------------- 1830
BSNT_01585___ 3575 GCGCCTCCAGAACGTGA 3591
RBAM_009450__ 1830 ----------------- 1830
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