Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01540 and RBAM_009380

See DNA alignment / Visit BSNT_01540 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence pep-align/BSNT_01540___yhcJ.1.9828.seq
#    -bsequence pep-align/RBAM_009380___yhcJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01540___yhcJ
# 2: RBAM_009380___yhcJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     144/280 (51.4%)
# Similarity:   193/280 (68.9%)
# Gaps:           8/280 ( 2.9%)
# Score: 707.0
# 
#
#=======================================

BSNT_01540___      1 MKKWLICS-FVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAE     49
                     |...||.| |:.:|::|.|:|.....:.:|.|||.|||.:||.::|:||.
RBAM_009380__      1 MNLRLINSLFLFILIMSLTSCHYPDGNRTITIGINESDQSIWEFVAKKAG     50

BSNT_01540___     50 EAGLDIQLIPFSDYAESDIALANKEIDANAFQTISYFQSFTQKYKLNLAP     99
                     |.||.:.|:.||||||:|:|||..::||||||::|||||.....|..|||
RBAM_009380__     51 EEGLQLSLVTFSDYAEADLALAGGDLDANAFQSVSYFQSLPPHVKKKLAP    100

BSNT_01540___    100 LGTTYITPMGIYSKRYDRIRDIPRGAVVSVPDKAFDFGRALTVLQEAGLL    149
                     |||||...:|:|||::.|::|||.|||::||.:|..|||||.::|||||:
RBAM_009380__    101 LGTTYAASLGVYSKQHKRLKDIPDGAVIAVPGEAAAFGRALFLMQEAGLM    150

BSNT_01540___    150 TLKNGFNGTGSVDMIKDNPRHLKLKAVRQQDAVSG---ADVFVMKPSEAK    196
                     |||.||.||||.|||||||:||.||...:::|...   ||..|:..||||
RBAM_009380__    151 TLKKGFTGTGSTDMIKDNPKHLTLKTETKKNAYQAAEHADAAVLSQSEAK    200

BSNT_01540___    197 KAGLNPKKHTLKSGGPMSGEEMNLIVVRAEDQDREALQTILELYQADDTA    246
                     :||.:.:|..|.....|....::||.|||||:|.|.:|.:|.|||:||||
RBAM_009380__    201 RAGFHAEKDALIRSAQMKEAYIHLIAVRAEDKDDERMQKLLSLYQSDDTA    250

BSNT_01540___    247 AFIEKEYQGDLVPAFLPLKRLSDWKNEFEH    276
                     |||||||:|.|:|.||....|::.|.    
RBAM_009380__    251 AFIEKEYEGSLIPVFLRGGFLTEKKE----    276


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