Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01540 and RBAM_009380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01540___yhcJ.1.9828.seq
# -bsequence dna-align/RBAM_009380___yhcJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01540___yhcJ
# 2: RBAM_009380___yhcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity: 552/925 (59.7%)
# Similarity: 552/925 (59.7%)
# Gaps: 188/925 (20.3%)
# Score: 1476.5
#
#
#=======================================
BSNT_01540___ 1 ATGAAAAAGTGGCTTATATGCAGTTTTGTCCTTGTTCTTCTCGTT----- 45
.||||...|.||||||||..|||| ||..|||||.||.||
RBAM_009380__ 1 TTGAACCTGCGGCTTATAAACAGT------CTGTTTCTTTTCATTTTGAT 44
BSNT_01540___ 46 ----TCATTTACTGCATGT--TCACCGTCTGCAGAACATGAATCG----A 85
|||.|||||.||||| |.|.| ||| ||..|||.|| |
RBAM_009380__ 45 CATGTCACTTACTTCATGTCATTATC--CTG----ACGGGAACCGGACAA 88
BSNT_01540___ 86 TAAAAATCGGGATTGCTGAGTCTGA-----CGGGGCAATATGGAACTATA 130
|.|..|||||.||...|||.||||| || ||.|||.|.|.|.
RBAM_009380__ 89 TTACTATCGGAATCAATGAATCTGATCAATCG-----ATCTGGGAGTTTG 133
BSNT_01540___ 131 TTGCTCAAAAGGCTGAAGAGGCAGGGCTGGATATT-CAGC------TGAT 173
|.||..||||.||.|..||||.||| ||| |||| ||.|
RBAM_009380__ 134 TCGCGAAAAAAGCCGGTGAGGAAGG-------ATTGCAGCTCTCTTTGGT 176
BSNT_01540___ 174 CCCTTTTTCTGATTATGCGGAGTCTGATATCGCACTTGCTAACAAAGAAA 223
..|.|||||.||||||||.|||.|.|||.|.||.|||||...|...||..
RBAM_009380__ 177 AACGTTTTCGGATTATGCCGAGGCCGATTTGGCGCTTGCCGGCGGGGATC 226
BSNT_01540___ 224 TTGATGCCAACGCCTTTCAAACCATTTCATATTTTCAGTCGTT----CAC 269
|.||.|||||.||.||||||.||.||||.||||||||.||.|| | |
RBAM_009380__ 227 TCGACGCCAATGCGTTTCAATCCGTTTCTTATTTTCAATCTTTGCCGC-C 275
BSNT_01540___ 270 TCA----AAAATACAAACTTAATTTGGCACCGCTCGGAACGACTTA---- 311
||| |||| |.||.| ||||.||..|.||||||||.||
RBAM_009380__ 276 TCATGTGAAAA-AGAAGC------TGGCTCCTTTAGGAACGACATATGCG 318
BSNT_01540___ 312 -CATAACGCCCATGGGCATTTATTCAAAACGATATGACCGAATCCGA--G 358
||| ||| ||||..|.|||||.||.|.|.||.|.|| .|.|| |
RBAM_009380__ 319 GCAT--CGC---TGGGGGTGTATTCCAAGCAACATAAACG--GCTGAAGG 361
BSNT_01540___ 359 ATATACCGCGA-GGAGCTGTCGTTTCTGTTCCGGATAAAGCGTTCGATTT 407
|||||||| || |||||.|||.||.|.||.||.|.|.|||||...|..||
RBAM_009380__ 362 ATATACCG-GACGGAGCGGTCATTGCCGTGCCTGGTGAAGCGGCGGCCTT 410
BSNT_01540___ 408 TGGCAGGGCGCTTACGGTGCTC---CAGGAAGCGGGTTTGCTAACGCTGA 454
.|||||||||||| .|.||| |||||.||.||..||.|.||..|||
RBAM_009380__ 411 CGGCAGGGCGCTT---TTTCTCATGCAGGAGGCCGGACTGATGACATTGA 457
BSNT_01540___ 455 AAAACGGATTTAACGGAACAGGTTCAGTTGATATGATTAAAGATAATCCG 504
||||.|||||.|.|||.||.||||||..|||||||||.||.||.||.|||
RBAM_009380__ 458 AAAAGGGATTCACCGGTACGGGTTCAACTGATATGATCAAGGACAACCCG 507
BSNT_01540___ 505 AGACACCTGAAATTAAAAGCTGTCCGGCAAC-----AGGATG-----CAG 544
|..||.||||..|||||| .|||.||| ||.|.| |||
RBAM_009380__ 508 AAGCATCTGACCTTAAAA-----ACGGAAACAAAAAAGAACGCCTATCAG 552
BSNT_01540___ 545 TAAGCGG----TGCCGACG----TGTTTGTCA-TGAAACCATCAGAAGCA 585
...|||| |||.|||| .| ||.||| |.|||.| ||.||.
RBAM_009380__ 553 GCGGCGGAACATGCTGACGCAGCAG-TTCTCAGTCAAAGC----GAGGCG 597
BSNT_01540___ 586 AAAAAAGCGGG----CCTGAACCCGAAAAAGCATACGCTAA--AGAGCGG 629
||||.|||.|| |.|| ||.|.|||.|..||||.| .||.|||
RBAM_009380__ 598 AAAAGAGCAGGATTTCATG----CGGAGAAGGACGCGCTGATCCGATCGG 643
BSNT_01540___ 630 CGGACCCATGTCTGGGGAAG---AGATGAATTTGATTGTTGTCAGAGCGG 676
|| |..||| ..||||| |.||..||.||||.|..|||||.||.|
RBAM_009380__ 644 CG--CAAATG---AAGGAAGCGTATATTCATCTGATCGCCGTCAGGGCTG 688
BSNT_01540___ 677 AGGATCAAGATCGGGAAGCGCTGCAAA----CCATTCTTGAGCTTTATCA 722
|||||.|||||...|||..|.|||||| ||..|||| |.|||||
RBAM_009380__ 689 AGGATAAAGATGATGAACGGATGCAAAAACTCCTGTCTT----TGTATCA 734
BSNT_01540___ 723 AGCTGATGATACAGCGGCATTTATAGAAAAAGAATACCAGGG-AG----- 766
|.|.||||||||.|||||.|||||.|||||||||||..|||| ||
RBAM_009380__ 735 ATCAGATGATACCGCGGCGTTTATTGAAAAAGAATATGAGGGCAGCCTGA 784
BSNT_01540___ 767 ---ATCTTGTCC-------CGGCTTTTCTGCCTTTGAAACGTCTTTCAGA 806
.|.||.||| |||| ||||| |..||||| |||
RBAM_009380__ 785 TTCCTGTTTTCCTGAGGGGCGGC-TTTCT--CACTGAAA--------AGA 823
BSNT_01540___ 807 TTGGAAGAATGAATTCGAACATTGA 831
||||||||
RBAM_009380__ 824 ----AAGAATGA------------- 831
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