Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01535 and RBAM_009330

See DNA alignment / Visit BSNT_01535 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence pep-align/BSNT_01535___yhcF.1.9828.seq
#    -bsequence pep-align/RBAM_009330___yhcF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01535___yhcF
# 2: RBAM_009330___yhcF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 125
# Identity:      85/125 (68.0%)
# Similarity:   107/125 (85.6%)
# Gaps:           4/125 ( 3.2%)
# Score: 461.0
# 
#
#=======================================

BSNT_01535___      1 MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNT     50
                     |:|:|||||||||||||:::|||:|.||.||||||||||||:|.||||||
RBAM_009330__      1 MENEFQSSKPIYLQIADRVYYRLIRSELSPGDKLPSVREMAVQMKVNPNT     50

BSNT_01535___     51 IQRTYSEMERLGIVETRRGQGTFITEKAEIVDELKDKLTREVLEGFVKQM    100
                     ||||||||||||||||||||||||.|::::..||||:||::|.:.|:::|
RBAM_009330__     51 IQRTYSEMERLGIVETRRGQGTFIAERSDLKAELKDRLTKDVFKRFIQEM    100

BSNT_01535___    101 KELGLTKEEMVEGIKTFTEGG----    121
                     .||||:.|||::|||.:.|..    
RBAM_009330__    101 AELGLSPEEMIDGIKQYAEEANDES    125


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