Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01535 and RBAM_009330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01535___yhcF.1.9828.seq
# -bsequence dna-align/RBAM_009330___yhcF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01535___yhcF
# 2: RBAM_009330___yhcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity: 272/386 (70.5%)
# Similarity: 272/386 (70.5%)
# Gaps: 28/386 ( 7.3%)
# Score: 942.0
#
#
#=======================================
BSNT_01535___ 1 ATGGACAATCAATTCCAATCCTCGAAACCGATTTATCTGCAGATCGCTGA 50
|||||.|||.||||.||.||.||.||.|||||||||||||||||.||.||
RBAM_009330__ 1 ATGGAGAATGAATTTCAGTCATCCAAGCCGATTTATCTGCAGATTGCCGA 50
BSNT_01535___ 51 TCAGATCTTTTATAGGCTGGTCAGGAAG-GAGCTGCTC-CCAGGAGACAA 98
||...|.|.|||..|||||.|| .|||| ||||| .|| ||.||.|||||
RBAM_009330__ 51 TCGTGTATATTACCGGCTGATC-CGAAGTGAGCT-TTCACCGGGGGACAA 98
BSNT_01535___ 99 GCTTCCTTCAGTAAGAGAAATGGCGATTCAAACTAAGGTAAATCCCAATA 148
.||.||.||.|||||.||.|||||..|.||.|..||.||.|||||.||||
RBAM_009330__ 99 ACTGCCGTCCGTAAGGGAGATGGCCGTACAGATGAAAGTGAATCCGAATA 148
BSNT_01535___ 149 CAATTCAAAGAACGTACAGTGAGATGGAAAGGCTGGGTATTGTGGAGACA 198
|.||.|||||||||||||||||.||||||||||||||.||.||||||||.
RBAM_009330__ 149 CGATACAAAGAACGTACAGTGAAATGGAAAGGCTGGGGATCGTGGAGACG 198
BSNT_01535___ 199 AGAAGAGGTCAAGGGACGTTTATTACGGAAA-----AAGCAGAAATCGTA 243
||||||||.||.||.||.|||||..|||||| .|.|.||||.||
RBAM_009330__ 199 AGAAGAGGACAGGGAACCTTTATAGCGGAAAGGTCCGATCTGAAAGCG-- 246
BSNT_01535___ 244 GACGAGCTGAAAGACAAGCTGACACGAGAGGTGCTGGAAGGCTTTGTCAA 293
|||||||||||||.||||||...|||.||..|..||.|||||.|..|
RBAM_009330__ 247 ---GAGCTGAAAGACAGGCTGACTAAAGACGTTTTCAAACGCTTTATTCA 293
BSNT_01535___ 294 GCAAATGAAAGAGCTGGGGCTAACGAAAGAGGAAATGGTAGAAGGGATTA 343
|.|||||...||||||||||||.|....|||||||||.|.||.|||||.|
RBAM_009330__ 294 GGAAATGGCGGAGCTGGGGCTATCTCCTGAGGAAATGATCGACGGGATCA 343
BSNT_01535___ 344 AAACATTCACAGAGGGAGGCTAA------------- 366
||..||...|.|| |||.||.||
RBAM_009330__ 344 AACAATATGCGGA-GGAAGCAAACGATGAATCTTGA 378
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