Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01429 and RBAM_008680

See DNA alignment / Visit BSNT_01429 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence pep-align/BSNT_01429___yfhM.1.9828.seq
#    -bsequence pep-align/RBAM_008680___yfhM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01429___yfhM-RBAM_008680___yfhM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01429___yfhM-RBAM_008680___yfhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01429___yfhM
# 2: RBAM_008680___yfhM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     202/287 (70.4%)
# Similarity:   236/287 (82.2%)
# Gaps:           2/287 ( 0.7%)
# Score: 1125.0
# 
#
#=======================================

BSNT_01429___      1 MDGVKCQFVNTNGITLHVAAAGPEDGPLIVLLHGFPEFWYGWKNQIKPLV     50
                     |:.:....:.|||:|||.|:|||:||||.||||||||||||||:|||||.
RBAM_008680__      1 MNDITFHMIETNGVTLHTASAGPKDGPLAVLLHGFPEFWYGWKSQIKPLA     50

BSNT_01429___     51 DAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVI    100
                     ||||.|:.|||||||||||||||::|.|||||||||||||.|||:||:||
RBAM_008680__     51 DAGYHVVVPDQRGYNLSDKPEGIENYTIDTLRDDIIGLITHFTDDKAVVI    100

BSNT_01429___    101 GHDWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPLYPPQWLKSSY    150
                     |||||||||||||:|||:|:||||.:|||||.||:.|||.|||||.||||
RBAM_008680__    101 GHDWGGAVAWHLATTRPQYVEKLITVNIPHPAVMRKVTPFYPPQWKKSSY    150

BSNT_01429___    151 IAYFQLPDIPEASLRENDYETLDKAIGLSDRPALFTSEDVSRYKEAWKQP    200
                     ||:||||:.||..|.|::|..||.|||||:|||||:.|||..|||||.:.
RBAM_008680__    151 IAFFQLPEKPERRLSEDNYRVLDHAIGLSERPALFSREDVDSYKEAWGRK    200

BSNT_01429___    201 GALTAMLNWYRALRKGSLAEK-PSYETVPYRMIWGMEDRFLSRKLAKETE    249
                     ||||||||||||:|.|.|... |....||||:|||:.||.||:||||||:
RBAM_008680__    201 GALTAMLNWYRAIRAGGLGPAVPLKMPVPYRLIWGVNDRALSKKLAKETK    250

BSNT_01429___    250 RHCPNGHLIFVDEASHWINHEKPAIVNQLILEYLKNQ    286
                     |..|||.|||:|:||||:.||||.||:.||.|||:. 
RBAM_008680__    251 RMIPNGDLIFIDDASHWVIHEKPRIVSHLIHEYLQQ-    286


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