Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01429 and RBAM_008680

See Amino acid alignment / Visit BSNT_01429 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_01429___yfhM.1.9828.seq
#    -bsequence dna-align/RBAM_008680___yfhM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01429___yfhM-RBAM_008680___yfhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01429___yfhM-RBAM_008680___yfhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01429___yfhM
# 2: RBAM_008680___yfhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity:     619/910 (68.0%)
# Similarity:   619/910 (68.0%)
# Gaps:          98/910 (10.8%)
# Score: 2041.5
# 
#
#=======================================

BSNT_01429___      1 GTGGACGGAGTTAAATGCCA----GTTT------GTCAATACGAACGGAA     40
                               .|.||||.||    ||||      .||.|.||.||||||.
RBAM_008680__      1 ----------ATGAATGACATTACGTTTCACATGATCGAAACAAACGGAG     40

BSNT_01429___     41 TCACGCTCCAC---GTTGCAGCCGCAGGACCGGAAGACGGCCCGTTAATT     87
                     |.|||||.|||   |.|.|||||   ||.|||.|||||||.||.||....
RBAM_008680__     41 TGACGCTGCACACGGCTTCAGCC---GGTCCGAAAGACGGTCCTTTGGCG     87

BSNT_01429___     88 GTCCTGCTCCATGGATTTCCTGAGTTTTGGTACGGCTGGAAAAATCAAAT    137
                     ||.|||||.||.||.|||||.||.||.||||||||||||||.|..||.||
RBAM_008680__     88 GTGCTGCTGCACGGGTTTCCGGAATTCTGGTACGGCTGGAAGAGCCAGAT    137

BSNT_01429___    138 CAAACCGCTTGTTGATGCGGGTTACCGGGTCATTGCTCCTGATCAGCGGG    187
                     |||||||||.|..|||||.||.||||..||..|.|..|||||||||||.|
RBAM_008680__    138 CAAACCGCTGGCGGATGCCGGATACCATGTTGTCGTGCCTGATCAGCGCG    187

BSNT_01429___    188 GCTACAATCTCAGTGACAAACCGGAAGGAATTGA----TTCATATCGGAT    233
                     ||||.||||||||||||||||||||.||.|||||    |  |||.|  ||
RBAM_008680__    188 GCTATAATCTCAGTGACAAACCGGAGGGCATTGAAAACT--ATACC--AT    233

BSNT_01429___    234 TGATACATTAAGAGATGATATCATCGGGCTTATTACGCAATTCACTGATG    283
                     ||||||..|.|||||.||.||.||||||||.||.||.||.||.||.||||
RBAM_008680__    234 TGATACGCTCAGAGACGACATTATCGGGCTGATCACTCATTTTACAGATG    283

BSNT_01429___    284 AAAAAGCAATTGTCATCGGTCATGACTGGGGAGGAGCTGTCGCATGGCAT    333
                     |.|||||..|.||||||||.||.||.|||||||||||.||.||.||||||
RBAM_008680__    284 ACAAAGCCGTCGTCATCGGACACGATTGGGGAGGAGCCGTGGCCTGGCAT    333

BSNT_01429___    334 TTGGCTTCCACACGCCCGGAATATCTTGAAAAACTGATCGCGATCAATAT    383
                     |||||..||||.||.|||.||||..||||||||.|||||.||.|||||||
RBAM_008680__    334 TTGGCAACCACGCGGCCGCAATACGTTGAAAAATTGATCACGGTCAATAT    383

BSNT_01429___    384 CCCGCACCCGCACGTCATGAAAACCGTAACGCCGCTTTATCCGCCGCAAT    433
                     ||||||||||...||.|||...|..||.||.|||.|.||.||||||||.|
RBAM_008680__    384 CCCGCACCCGGCGGTTATGCGGAAGGTCACACCGTTCTACCCGCCGCAGT    433

BSNT_01429___    434 GGCTGAAAAGCTCGTATATCGCATACTTCCAGCTGCCCGATATACCGGAG    483
                     ||..|||||||||.||||||||.|.|||.|||||.||.||.|..||||| 
RBAM_008680__    434 GGAAGAAAAGCTCTTATATCGCTTTCTTTCAGCTTCCGGAAAAGCCGGA-    482

BSNT_01429___    484 GCATCACTAAGG------GAAAATGATTATGAAAC-----ATTAGACAAA    522
                          ||..|||      |||.|..|||     ||     |||.||..|.
RBAM_008680__    483 -----ACGGAGGTTGTCTGAAGACAATT-----ACCGCGTATTGGATCAC    522

BSNT_01429___    523 GCGATTGGATTATCCGACCGTCCCGCGCTTTTTACATCCGAGGATGTCAG    572
                     |||||.||.||||||||.||.||.|||||||||.||...||.||||||..
RBAM_008680__    523 GCGATCGGCTTATCCGAACGACCGGCGCTTTTTTCACGGGAAGATGTCGA    572

BSNT_01429___    573 CAGGTACAAAGAAGCGTGGAAGCAG-CCGGGCGCGCTGACAGCTATGCTG    621
                     |||.|||||||||||.||| .|||| ...||.|||||.||.||.||||||
RBAM_008680__    573 CAGCTACAAAGAAGCTTGG-GGCAGAAAAGGAGCGCTCACGGCGATGCTG    621

BSNT_01429___    622 AACTGGTACAGAGCCCTCAGAAAAGGAAGCTT-GGCAGAGAAACCCT---    667
                     |||||||||.|.||..|||||...||..|.|| ||        ||||   
RBAM_008680__    622 AACTGGTACCGGGCGATCAGAGCCGGCGGTTTAGG--------CCCTGCC    663

BSNT_01429___    668 ------CTTACGAAA---CAGTACCTTACCGAATGATCTGGGG----AAT    704
                           ||||  |||   |.||.||.||||||.|.||.|||||    |||
RBAM_008680__    664 GTTCCGCTTA--AAATGCCCGTTCCGTACCGATTAATATGGGGCGTCAAT    711

BSNT_01429___    705 GGAAGACCGCTTTTTGAGCAGAAAGCTTGCGAAAGAGACGGAAAGG--CA    752
                     |...||.|||    ||||||.||||||.||.||.||.||..||.||  .|
RBAM_008680__    712 GACCGAGCGC----TGAGCAAAAAGCTCGCCAAGGAAACAAAACGGATGA    757

BSNT_01429___    753 TTGCCCGAATGGACATCTCATCTTTGTTGATGAAGCTTCCCATTGGATTA    802
                     ||  ||.||.||..|..|.|||||..|.|||||.||.||.||||||.|.|
RBAM_008680__    758 TT--CCAAACGGCGACTTAATCTTCATAGATGATGCCTCACATTGGGTCA    805

BSNT_01429___    803 ACCACGAAAAGCCAGC-CATCGTCAATCAGCTGATTTTGGAATATCTTAA    851
                     ..||||||||.|| || ||||||||..||..|||||...|||||.|||.|
RBAM_008680__    806 TTCACGAAAAACC-GCGCATCGTCAGCCATTTGATTCATGAATACCTTCA    854

BSNT_01429___    852 GAACCAATAA    861
                     |   ||||||
RBAM_008680__    855 G---CAATAA    861


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.