Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01427 and RBAM_008670

See DNA alignment / Visit BSNT_01427 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence pep-align/BSNT_01427___yfhL.1.9828.seq
#    -bsequence pep-align/RBAM_008670___yfhL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01427___yfhL
# 2: RBAM_008670___yfhL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 121
# Identity:      56/121 (46.3%)
# Similarity:    73/121 (60.3%)
# Gaps:          21/121 (17.4%)
# Score: 247.5
# 
#
#=======================================

BSNT_01427___      1 MTDLVGGGLMIIAGILIKLFPPKSINSVYGYRTRRSMSDQRLWNEANRYS     50
                     |..::||.||..||||:..||||||||:|||||:|||:|:..|.|.||:|
RBAM_008670__      1 MIMVIGGLLMAAAGILVTFFPPKSINSLYGYRTKRSMADESQWKEGNRFS     50

BSNT_01427___     51 ASLMILSGLVIAGMGLLLGSNL--------FILQLILLIAACVITFMLTE     92
                     |.||||.||:.|..| ..||.|        .|:|.::||...|:..:|||
RBAM_008670__     51 ALLMILFGLISAAAG-FAGSLLIRLTQPFALIVQAVILIVISVLIIVLTE     99

BSNT_01427___     93 KRLKIMTHSQGGDRSGRS---    110
                     :|||         ::||.   
RBAM_008670__    100 RRLK---------QTGRRIDE    111


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.