Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01427 and RBAM_008670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01427___yfhL.1.9828.seq
# -bsequence dna-align/RBAM_008670___yfhL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01427___yfhL
# 2: RBAM_008670___yfhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity: 219/386 (56.7%)
# Similarity: 219/386 (56.7%)
# Gaps: 103/386 (26.7%)
# Score: 528.5
#
#
#=======================================
BSNT_01427___ 1 ---ATGACGGATTTAGTCGGCGGAGGGCTTATGATCATTGCG---GGCAT 44
||.|.|| ||.||||| ||.|||.||||...|||| |||||
RBAM_008670__ 1 ATGATAATGG---TAATCGGC---GGCCTTCTGATGGCTGCGGCCGGCAT 44
BSNT_01427___ 45 ACTGATCAAACTGTTTCCTCCCAAATCGATCAACAGTGTGTACGGATACA 94
..|..|||.|.|.|||||.||.||.|||||||||||..||||||||||..
RBAM_008670__ 45 TTTAGTCACATTTTTTCCGCCGAAGTCGATCAACAGCCTGTACGGATATC 94
BSNT_01427___ 95 GAACGAGACGATCAATGTCAGATCAAAGATT----ATGGAATGAAGCGAA 140
|.||||..||.||.|||.|.||| ||.| .|||||.||||..||
RBAM_008670__ 95 GGACGAAGCGCTCTATGGCGGAT----GAGTCGCAGTGGAAAGAAGGCAA 140
BSNT_01427___ 141 CCGTTACAGTGC-ATCATTAATGATCCTG-TCAGGCTTGGTGATT---GC 185
.||.|.|||||| .|| .|.|||||..|| ||.|.||| ||| ||
RBAM_008670__ 141 TCGATTCAGTGCGCTC-CTCATGATTTTGTTCGGCCTT----ATTTCGGC 185
BSNT_01427___ 186 GGGA-ATGGGTTTGCTGCTGGGATCAAACTTGTTTATTCTTCAGCTTATC 234
||.| .|||.||||| ||| ||..|| |||||||
RBAM_008670__ 186 GGCAGCTGGATTTGC----GGG--CAGCCT-------------GCTTATC 216
BSNT_01427___ 235 CTGCTGATT--GCCG-----CCTG--TGTT------ATAACATTTATGCT 269
|.|||||.| |||| |||| .||| .|||.|||.||..|
RBAM_008670__ 217 CGGCTGACTCAGCCGTTCGCCCTGATCGTTCAGGCCGTAATATTGATTGT 266
BSNT_01427___ 270 GA-CGGAGAAAAGGCTGAAAATCATGACG----CACAGTCAAGGAGGAGA 314
|| |.|.|.| ||| ||||| || .|||| || ||.|||
RBAM_008670__ 267 GATCAGCGTA----CTG---ATCAT--CGTCTTAACAG--AA--AGAAGA 303
BSNT_01427___ 315 TAGAA------GTGGACGGAGTTAA----------- 333
|.||| |.||| |||| ||
RBAM_008670__ 304 TTGAAACAAACGGGGA-GGAG--AATCGATGAATGA 336
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