Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01361 and RBAM_008370

See DNA alignment / Visit BSNT_01361 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence pep-align/BSNT_01361___yfiA.1.9828.seq
#    -bsequence pep-align/RBAM_008370___glvR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01361___yfiA
# 2: RBAM_008370___glvR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     209/254 (82.3%)
# Similarity:   237/254 (93.3%)
# Gaps:           1/254 ( 0.4%)
# Score: 1118.0
# 
#
#=======================================

BSNT_01361___      1 MQLEELINQHYSKLNDNDFHILKYILNHKHTCYHLGIDALAKACSVSRSS     50
                     |.||||:||||:|||||||:|||||||||||||||||:.:||||:|||||
RBAM_008370__      1 MSLEELVNQHYAKLNDNDFYILKYILNHKHTCYHLGINEMAKACNVSRSS     50

BSNT_01361___     51 ILRLAQKLGFSGYSEFRVFLKWEDQPEEGESMSFQKLLDDIEANLKFLRT    100
                     ||||||||||||||||||||||||||||||:|:|:|||||||||:|::::
RBAM_008370__     51 ILRLAQKLGFSGYSEFRVFLKWEDQPEEGENMTFEKLLDDIEANVKYVKS    100

BSNT_01361___    101 KDMTDMCQLIDEADRIFVYGSGNAQKICARDLQRMFIPRHRYLILIEDTN    150
                     ||||:||:|||||.||||||||.||::|||:|||||:.|.:|||||:|..
RBAM_008370__    101 KDMTEMCRLIDEAKRIFVYGSGTAQRVCARELQRMFVSRRKYLILIQDIT    150

BSNT_01361___    151 EFNLMRDDFKVNDLFIIISLSGETPELIPQARMLSAKGIPFISITNLKNN    200
                     ||::|.|||||:|:||||||||||||||||.|.|||||:|||||||||||
RBAM_008370__    151 EFDIMCDDFKVDDVFIIISLSGETPELIPQVRTLSAKGVPFISITNLKNN    200

BSNT_01361___    201 VLAQLTPHNLYATSKPVTLSDKTEIVAFAPFFLVGEALFRAYVDYKEAEK    250
                     ||||.||:|||||||||||||||||||||||||||||||||||||||.|.
RBAM_008370__    201 VLAQTTPYNLYATSKPVTLSDKTEIVAFAPFFLVGEALFRAYVDYKELEN    250

BSNT_01361___    251 NDNE    254
                     .|. 
RBAM_008370__    251 FDK-    253


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