Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01361 and RBAM_008370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01361___yfiA.1.9828.seq
# -bsequence dna-align/RBAM_008370___glvR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01361___yfiA
# 2: RBAM_008370___glvR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity: 592/779 (76.0%)
# Similarity: 592/779 (76.0%)
# Gaps: 31/779 ( 4.0%)
# Score: 2217.5
#
#
#=======================================
BSNT_01361___ 1 ATGCAG-CTCGAAGAACTGATCAATCAGCACTACAGC-AAATTGAATGAC 48
||| || ||.|||||||||.|.||.|||||.||| || |||||.|||||.
RBAM_008370__ 1 ATG-AGTCTTGAAGAACTGGTTAACCAGCATTAC-GCGAAATTAAATGAT 48
BSNT_01361___ 49 AACGATTTTCATATTTTAAAATATATATTGAATCATAAGCACACATGCTA 98
|||||||||.||||||||||||||||||||||||||||.||.||.||.||
RBAM_008370__ 49 AACGATTTTTATATTTTAAAATATATATTGAATCATAAACATACGTGTTA 98
BSNT_01361___ 99 TCACCTTGGAATCGACGCGCTTGCCAAAGCTTGCAGTGTATCGCGTTCCT 148
.||.||.||.|||.|.|.|.|.||.|||||.||||.|||.||.||.||.|
RBAM_008370__ 99 CCATCTCGGTATCAATGAGATGGCGAAAGCCTGCAATGTCTCTCGGTCTT 148
BSNT_01361___ 149 CAATTTTACGGCTTGCCCAAAAGCTCGGTTTCAGCGGTTACAGTGAATTT 198
|.||..|.|||||.|||||||||||.||.||||||||.|||||||||||.
RBAM_008370__ 149 CCATCCTGCGGCTCGCCCAAAAGCTGGGCTTCAGCGGCTACAGTGAATTC 198
BSNT_01361___ 199 CGCGTCTTTTTAAAGTGGGAAGATCAGCCGGAAGAAGGCGAGAGTATGAG 248
||.||.|||.|.||.|||||.||||||||.|||||.|||||||.|||||.
RBAM_008370__ 199 CGGGTTTTTCTGAAATGGGAGGATCAGCCTGAAGAGGGCGAGAATATGAC 248
BSNT_01361___ 249 TTTTCAAAAGCTGCTTGATGATATTGAAGCAAATTTGAAGTTCTTACG-- 296
.|||.||||||||||.||||||||||||||.|||.|.|| .||||
RBAM_008370__ 249 ATTTGAAAAGCTGCTGGATGATATTGAAGCCAATGTAAA----ATACGTG 294
BSNT_01361___ 297 --GACAAAGGACATGACGGACATGTGCCAGCTGATTGATGAAGCGGACCG 344
|.||||.||.||||||||.|||||||.||||||.||||||||..|.||
RBAM_008370__ 295 AAGTCAAAAGATATGACGGAGATGTGCCGGCTGATAGATGAAGCAAAACG 344
BSNT_01361___ 345 CATTTTCGTCTACGGTTCTGGAAATGCGCAAAAGATATGCGCCCGCGACC 394
.||||||||.|||||.||.||.|..||.||.|.|.|.||||||||.||.|
RBAM_008370__ 345 GATTTTCGTTTACGGATCGGGCACGGCTCAGAGGGTGTGCGCCCGTGAGC 394
BSNT_01361___ 395 TGCAAAGAATGTT--TATTCCGCGCCATCGC-----TATCTTATTTTGAT 437
||||..|.||||| |||.||| || |||||.|||||.||
RBAM_008370__ 395 TGCAGCGGATGTTTGTATCCCG-------GCGGAAGTATCTGATTTTAAT 437
BSNT_01361___ 438 TGAAGATA-CAAATGAATTTAATTTGATGCGCGATGATTTTAAAGTAAAC 486
|.|.||.| ||.| ||.|||.||.|.|||.|.|||||||||||.||..|.
RBAM_008370__ 438 TCAGGACATCACA-GAGTTTGATATCATGTGTGATGATTTTAAGGTTGAT 486
BSNT_01361___ 487 GATCTGTTTATCATCATTTCTCTTTCCGGAGAAACACCGGAGCTGATTCC 536
||..|.||.|||||.||||||.|.||.||.||||||||.||..|.|||||
RBAM_008370__ 487 GACGTATTCATCATTATTTCTTTATCAGGCGAAACACCCGAATTAATTCC 536
BSNT_01361___ 537 TCAGGCAAGAATGCTTTCTGCAAAGGGTATTCCCTTTATTTCCATTACGA 586
.||||.|||.|..||.||.||||||||..||||.||||||||.||.||.|
RBAM_008370__ 537 GCAGGTAAGGACCCTGTCCGCAAAGGGAGTTCCGTTTATTTCAATCACCA 586
BSNT_01361___ 587 ATTTAAAAAACAATGTCCTCGCCCAGCTGACTCCGCATAATCTTTATGCG 636
||.|.||||||||.||.||.||.||...|||.|||.||||||||||||||
RBAM_008370__ 587 ATCTGAAAAACAACGTACTGGCGCAAACGACGCCGTATAATCTTTATGCG 636
BSNT_01361___ 637 ACAAGCAAACCTGTGACATTAAGCGATAAAACGGAAATTGTCGCTTTTGC 686
||.|||||.||.|||||.||||||||||||||||||||.|||||.|||||
RBAM_008370__ 637 ACCAGCAAGCCGGTGACGTTAAGCGATAAAACGGAAATCGTCGCATTTGC 686
BSNT_01361___ 687 ACCGTTTTTTCTCGTTGGCGAAGCATTGTTCCGCGCATATGTTGATTACA 736
.|||||||||||.||.||||||||.||.|||||.||||||||||||||.|
RBAM_008370__ 687 CCCGTTTTTTCTGGTGGGCGAAGCGTTATTCCGTGCATATGTTGATTATA 736
BSNT_01361___ 737 AAGAGGCAGAAAAAAATGACAATGAGTAG 765
|||||...|||||...|||.||..||
RBAM_008370__ 737 AAGAGCTCGAAAATTTTGATAAATAG--- 762
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