Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01332 and RBAM_008200

See DNA alignment / Visit BSNT_01332 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence pep-align/BSNT_01332___yfjS.1.9828.seq
#    -bsequence pep-align/RBAM_008200___pdaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01332___yfjS-RBAM_008200___pdaA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01332___yfjS-RBAM_008200___pdaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01332___yfjS
# 2: RBAM_008200___pdaA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     234/263 (89.0%)
# Similarity:   247/263 (93.9%)
# Gaps:           0/263 ( 0.0%)
# Score: 1282.0
# 
#
#=======================================

BSNT_01332___      1 MKWMCSICCAAVLLAGGAAQAEAVPNEPINWGFKRSVNHQPPDAGKQLNS     50
                     |||.|||||.||.||||...|||||||.|||||||||||||||||:||::
RBAM_008200__      1 MKWFCSICCMAVFLAGGINSAEAVPNERINWGFKRSVNHQPPDAGRQLDN     50

BSNT_01332___     51 LIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVT    100
                     |::||||||||||||||||||||||||||||||||||||||.||||||||
RBAM_008200__     51 LVKKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHHVTGTFFVT    100

BSNT_01332___    101 GHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEV    150
                     |||||:||.||||||.|||||||||||||||||||.||||||||||.|.|
RBAM_008200__    101 GHFVKEQPDLIKRMSKEGHIIGNHSFHHPDLTTKTGDQIQDELDSVTEAV    150

BSNT_01332___    151 YKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQK    200
                     |.||||:||||||||||||||||||||||||||||||||||||||:|.||
RBAM_008200__    151 YNITGKRDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKVNEQK    200

BSNT_01332___    201 GKKYAYDHMIKQAHPGAIYLLHTVSRDNAEALDDAITDLKKQGYTFKSID    250
                     ||:||||||||||||||||||||||:||:||||||||||||:||||||||
RBAM_008200__    201 GKQYAYDHMIKQAHPGAIYLLHTVSKDNSEALDDAITDLKKEGYTFKSID    250

BSNT_01332___    251 DLMFEKEMKMPSL    263
                     |||||||||:|.|
RBAM_008200__    251 DLMFEKEMKLPRL    263


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