Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00963 and RBAM_007950

See DNA alignment / Visit BSNT_00963 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence pep-align/BSNT_00963___ydgA.1.9828.seq
#    -bsequence pep-align/RBAM_007950___ydgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00963___ydgA-RBAM_007950___ydgA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00963___ydgA-RBAM_007950___ydgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00963___ydgA
# 2: RBAM_007950___ydgA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 80
# Identity:      59/80 (73.8%)
# Similarity:    68/80 (85.0%)
# Gaps:           0/80 ( 0.0%)
# Score: 329.0
# 
#
#=======================================

BSNT_00963___      1 MPYQINIANIKINGVTQNGNIDVGPTVHNSHTANSKYFGANFSLGDLSPT     50
                     ||||||:.|||:||.|||||:|:|.||.||||||||:.||||||||.||.
RBAM_007950__      1 MPYQINVVNIKVNGATQNGNVDIGQTVQNSHTANSKFVGANFSLGDFSPA     50

BSNT_00963___     51 SSLLNTGNIDSDVSDQDQIGNPSAPIANQI     80
                     :..||:|::|.||||||||.|||.||||||
RBAM_007950__     51 AGCLNSGHLDPDVSDQDQIANPSMPIANQI     80


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