Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01057 and RBAM_006560

See DNA alignment / Visit BSNT_01057 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence pep-align/BSNT_01057___ydjE.1.9828.seq
#    -bsequence pep-align/RBAM_006560___ydjE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01057___ydjE-RBAM_006560___ydjE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01057___ydjE-RBAM_006560___ydjE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01057___ydjE
# 2: RBAM_006560___ydjE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity:     271/320 (84.7%)
# Similarity:   294/320 (91.9%)
# Gaps:          12/320 ( 3.8%)
# Score: 1401.0
# 
#
#=======================================

BSNT_01057___      1 ------------MIDFFCTDVDVDLMEGRHFLKSAGGAPANVSAAIAKLG     38
                                 :||||||||||||.|||:||||||||||||||||||||
RBAM_006560__      1 MGSQSVICIGELLIDFFCTDVDVDLTEGRNFLKSAGGAPANVSAAIAKLG     50

BSNT_01057___     39 GDAAFSGKVGKDPFGYFLKRTLDAVHVDTSMLVMDEKAPTTLAFVSLKQN     88
                     ||||||||.||||||||||:||||.|||||||||||||||||||||||||
RBAM_006560__     51 GDAAFSGKTGKDPFGYFLKQTLDAAHVDTSMLVMDEKAPTTLAFVSLKQN    100

BSNT_01057___     89 GERDFVFNRGADALFTLEDIDQEKLNGAKILHFGSATALLSDPFCSAYLR    138
                     |||||||||||||||||:|||.||:|||||:|||||||||||||||||||
RBAM_006560__    101 GERDFVFNRGADALFTLDDIDLEKVNGAKIVHFGSATALLSDPFCSAYLR    150

BSNT_01057___    139 LMSIAKDNGQFISFDPNYREDLWRGRVSEFVSVAKKAIAVSDFVKVSDEE    188
                     |||||||||||||||||||||||:||||||::.||||:||||||||||||
RBAM_006560__    151 LMSIAKDNGQFISFDPNYREDLWKGRVSEFINTAKKAVAVSDFVKVSDEE    200

BSNT_01057___    189 LEIISGVKDHEKGVAILHEIGANIVAVTLGKSGTLLSNGKDREIIPSIPV    238
                     ||||||.|||::|||:|||:||.|||||:||:|||||||||.:|||||||
RBAM_006560__    201 LEIISGAKDHKEGVAVLHELGAGIVAVTIGKNGTLLSNGKDIDIIPSIPV    250

BSNT_01057___    239 TSIDSTGAGDAFVGAALYQLANTDQIQSVEADFVKLREIVAFANKVGALV    288
                     |||||||||||||||||||||.||:||:...||.|||:||:|||||||||
RBAM_006560__    251 TSIDSTGAGDAFVGAALYQLARTDEIQTAADDFAKLRDIVSFANKVGALV    300

BSNT_01057___    289 CTKMGAIDALPSLDEIEVSL    308
                     |||:|||||||||.|:||||
RBAM_006560__    301 CTKIGAIDALPSLKEVEVSL    320


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